Query gi|254781227|ref|YP_003065640.1| hypothetical protein CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 68 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Mon May 30 07:04:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781227.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 pfam04924 Pox_A6 Poxvirus A6 p 55.7 8.1 0.00021 20.0 2.0 18 45-62 191-209 (371) 2 pfam08990 Docking Erythronolid 39.7 33 0.00084 16.8 3.1 19 47-65 2-20 (27) 3 TIGR02109 PQQ_syn_pqqE coenzym 36.8 11 0.00029 19.3 0.3 11 21-31 291-301 (363) 4 pfam10140 essB Predicted membr 21.5 74 0.0019 15.0 2.3 23 45-67 111-133 (359) 5 COG3835 CdaR Sugar diacid util 19.9 86 0.0022 14.7 2.7 25 38-62 84-108 (376) 6 COG4920 Predicted membrane pro 16.9 97 0.0025 14.4 2.1 19 46-64 83-101 (249) 7 COG1456 CdhE CO dehydrogenase/ 15.3 1.1E+02 0.0029 14.1 2.6 33 23-55 377-409 (467) 8 COG4499 Predicted membrane pro 14.4 1.2E+02 0.003 14.0 2.3 25 44-68 137-161 (434) 9 TIGR01125 TIGR01125 MiaB-like 13.2 1.3E+02 0.0033 13.8 3.4 32 29-62 322-353 (475) 10 pfam05251 UPF0197 Uncharacteri 11.0 1.5E+02 0.0038 13.4 1.6 12 54-65 48-59 (77) No 1 >pfam04924 Pox_A6 Poxvirus A6 protein. Probab=55.71 E-value=8.1 Score=20.01 Aligned_cols=18 Identities=61% Similarity=0.875 Sum_probs=13.3 Q ss_pred CCCCHHHHHHHHH-HHHHH Q ss_conf 7756899999999-99999 Q gi|254781227|r 45 ETTDEEKLREYKE-FVISA 62 (68) Q Consensus 45 ettdeeklreyke-fvisa 62 (68) --||.+||.||+| |-||+ T Consensus 191 LvtDK~KL~EYreifsiS~ 209 (371) T pfam04924 191 LVTDKEKLEEYREIFSIST 209 (371) T ss_pred CCCCHHHHHHHHHHHHHHH T ss_conf 0044888999999994008 No 2 >pfam08990 Docking Erythronolide synthase docking. The N terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerize to form amphipathic parallel alpha-helical coiled coils: dimerization is essential for protein function. Probab=39.73 E-value=33 Score=16.84 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=14.7 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 5689999999999999887 Q gi|254781227|r 47 TDEEKLREYKEFVISAFAK 65 (68) Q Consensus 47 tdeeklreykefvisafak 65 (68) .+|+|||+|-..|..-.-. T Consensus 2 ~~e~kLr~YLkrvtadL~~ 20 (27) T pfam08990 2 ANEEKLRDYLKRVTADLHE 20 (27) T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 8489999999999999999 No 3 >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process. Probab=36.80 E-value=11 Score=19.26 Aligned_cols=11 Identities=36% Similarity=0.770 Sum_probs=8.3 Q ss_pred EEEECCCCCCC Q ss_conf 34204410346 Q gi|254781227|r 21 EIRADGWMKED 31 (68) Q Consensus 21 eiradgwmked 31 (68) ..|.++||+|- T Consensus 291 ~YRG~~WMpEP 301 (363) T TIGR02109 291 AYRGTDWMPEP 301 (363) T ss_pred CCCCCCCCCCC T ss_conf 25587888788 No 4 >pfam10140 essB Predicted membrane protein essB. Members of this family of prokaryotic proteins include the virulence factor essB, which is required for the synthesis and secretion of EsxA and EsxB, both ESAT-6 like proteins. Probab=21.47 E-value=74 Score=15.05 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=18.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 77568999999999999988740 Q gi|254781227|r 45 ETTDEEKLREYKEFVISAFAKAI 67 (68) Q Consensus 45 ettdeeklreykefvisafakai 67 (68) +.+.|+-|++||-++|+.|.+.. T Consensus 111 ~~~ee~fl~~yKa~ii~ll~~k~ 133 (359) T pfam10140 111 ELDEERFLKEYKAFIIALFDGKY 133 (359) T ss_pred CCCHHHHHHHHHHHHHHHHCCCC T ss_conf 78999999999999999976677 No 5 >COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms] Probab=19.89 E-value=86 Score=14.70 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=21.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 9998406775689999999999999 Q gi|254781227|r 38 VVVSVAGETTDEEKLREYKEFVISA 62 (68) Q Consensus 38 vvvsvagettdeeklreykefvisa 62 (68) -||+|-|-|-+.+++|.|-|.|--+ T Consensus 84 ~vVGViGITGeP~~Vr~y~ELVrm~ 108 (376) T COG3835 84 KVVGVIGITGEPEEVRKYGELVRMT 108 (376) T ss_pred CEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 2589985568907789999999999 No 6 >COG4920 Predicted membrane protein [Function unknown] Probab=16.89 E-value=97 Score=14.42 Aligned_cols=19 Identities=47% Similarity=0.742 Sum_probs=15.4 Q ss_pred CCCHHHHHHHHHHHHHHHH Q ss_conf 7568999999999999988 Q gi|254781227|r 46 TTDEEKLREYKEFVISAFA 64 (68) Q Consensus 46 ttdeeklreykefvisafa 64 (68) ..|||-|.||++|.-+.|. T Consensus 83 ~kDee~l~E~~~~~~~~f~ 101 (249) T COG4920 83 EKDEELLNEYKRFARASFM 101 (249) T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 7449999999999998222 No 7 >COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion] Probab=15.27 E-value=1.1e+02 Score=14.09 Aligned_cols=33 Identities=36% Similarity=0.494 Sum_probs=27.2 Q ss_pred EECCCCCCCCCEEEEEEEEECCCCCCHHHHHHH Q ss_conf 204410346823689999840677568999999 Q gi|254781227|r 23 RADGWMKEDNTARLSVVVSVAGETTDEEKLREY 55 (68) Q Consensus 23 radgwmkedntarlsvvvsvagettdeeklrey 55 (68) .-|+|.---+|.-+.|-|||||-.-.-++..+. T Consensus 377 ~i~cwLLvldT~G~aVdvSvAGGQ~tg~~vk~l 409 (467) T COG1456 377 GIDCWLLVLDTGGLAVDVSVAGGQLTGEKVKDL 409 (467) T ss_pred CEEEEEEEEECCCCEEEEEEECCCCCCHHHHHH T ss_conf 824899998069827999860564360889999 No 8 >COG4499 Predicted membrane protein [Function unknown] Probab=14.41 E-value=1.2e+02 Score=13.96 Aligned_cols=25 Identities=44% Similarity=0.550 Sum_probs=19.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 6775689999999999999887409 Q gi|254781227|r 44 GETTDEEKLREYKEFVISAFAKAIS 68 (68) Q Consensus 44 gettdeeklreykefvisafakais 68 (68) -|++.|+-+.+||-++|.+|....| T Consensus 137 ye~tee~f~~~ykA~~~~~fn~k~~ 161 (434) T COG4499 137 YEMTEERFLKEYKALAIYAFNGKFS 161 (434) T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 7789999999999999999737764 No 9 >TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. . Probab=13.24 E-value=1.3e+02 Score=13.78 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=26.9 Q ss_pred CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 3468236899998406775689999999999999 Q gi|254781227|r 29 KEDNTARLSVVVSVAGETTDEEKLREYKEFVISA 62 (68) Q Consensus 29 kedntarlsvvvsvagettdeeklreykefvisa 62 (68) -+|-.-|-|+.|.-.||| ||...|.+.||-.+ T Consensus 322 ~P~~vlRttfIVGFPGET--EEdF~eL~~Fv~e~ 353 (475) T TIGR01125 322 VPDAVLRTTFIVGFPGET--EEDFQELLDFVEEG 353 (475) T ss_pred CCCCEEEEEEEECCCCCC--HHHHHHHHHHHHHH T ss_conf 566177224688688998--78899999998520 No 10 >pfam05251 UPF0197 Uncharacterized protein family (UPF0197). This family of proteins is functionally uncharacterized. Probab=10.96 E-value=1.5e+02 Score=13.43 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999887 Q gi|254781227|r 54 EYKEFVISAFAK 65 (68) Q Consensus 54 eykefvisafak 65 (68) -|||..||++|- T Consensus 48 l~KEllis~~as 59 (77) T pfam05251 48 LFKELLISLVAS 59 (77) T ss_pred HHHHHHHHHHHH T ss_conf 899999999999 Done!