RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781227|ref|YP_003065640.1| hypothetical protein
CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>gnl|CDD|33417 COG3618, COG3618, Predicted metal-dependent hydrolase of the
           TIM-barrel fold [General function prediction only].
          Length = 279

 Score = 27.2 bits (60), Expect = 1.0
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 7   GVKHFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVISAF 63
            +   D  K       R          A+LS V + + E+   E +R Y E +I  F
Sbjct: 175 KINLEDPWKAALARLARRPNVW-----AKLSGVYAYSDESWTVEDVRPYVEELIELF 226


>gnl|CDD|147207 pfam04924, Pox_A6, Poxvirus A6 protein. 
          Length = 371

 Score = 25.0 bits (55), Expect = 4.2
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)

Query: 47  TDEEKLREYKE-FVISA 62
           TD+EKL EY+E F IS 
Sbjct: 193 TDKEKLEEYREIFSIST 209


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 732,529
Number of extensions: 27603
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 6,263,737
Length adjustment: 39
Effective length of query: 29
Effective length of database: 5,420,986
Effective search space: 157208594
Effective search space used: 157208594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)