Query gi|254781228|ref|YP_003065641.1| hypothetical protein CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 87
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:50:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781228.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gme_A Polyribonucleotide nucl 37.2 14 0.00058 18.1 1.9 67 3-73 142-232 (549)
2 3cdi_A Polynucleotide phosphor 30.4 22 0.00093 16.9 2.1 50 21-74 189-239 (723)
3 3c9p_A Uncharacterized protein 22.4 47 0.002 15.1 2.9 17 53-69 95-111 (123)
4 3htk_A Structural maintenance 18.5 56 0.0023 14.7 2.2 26 43-68 28-53 (60)
5 2pyq_A Uncharacterized protein 10.8 95 0.004 13.4 2.0 30 44-74 68-97 (114)
6 3brc_A Conserved protein of un 10.7 46 0.0019 15.2 0.0 38 4-41 42-79 (156)
7 3h87_C Putative uncharacterize 9.2 1.1E+02 0.0044 13.2 1.4 23 33-55 8-33 (73)
8 1zk6_A Foldase protein PRSA; a 7.6 64 0.0027 14.4 -0.2 21 39-59 7-27 (93)
9 1o8r_A Guanylin; prohormone, G 7.1 1.4E+02 0.0058 12.5 1.5 26 46-87 62-87 (94)
10 1eq3_A Peptidyl-prolyl CIS/tra 6.8 71 0.003 14.1 -0.3 21 39-59 5-25 (96)
No 1
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=37.17 E-value=14 Score=18.08 Aligned_cols=67 Identities=28% Similarity=0.389 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHC-----------------------CCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 88888840455776440-----------------------7552688873243136888876432011216899999999
Q gi|254781228|r 3 NTPWNGPKFDVLTRRIA-----------------------DQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRK 59 (87)
Q Consensus 3 ntpwngpkfdvltrria-----------------------dqdsvlilrlglgtvsedilrhieleakdsanellkplrk 59 (87)
.-||+||---|---+|. ..|+|+..--+-.-+||+.+ ++|-.-|.+-.+++-+
T Consensus 142 dIPf~GPvaaVRVG~idge~ViNPt~~qle~SdLDLvVAGT~daVlMVE~~A~EvsEe~m----l~AI~~ahe~iq~ii~ 217 (549)
T 3gme_A 142 GIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQM----LGAVVFGHEQQQVVIQ 217 (549)
T ss_dssp CSCCCCCCEEEEEEEETTEEEESCCTTTTTTCSBCEEEEECSSCEEEEEEEEEEECHHHH----HHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCEEEEEEECCEEEECCCHHHHHCCCEEEEEEECCCHHHHHHCCCCCCCHHHH----HHHHHHHHHHHHHHHH
T ss_conf 899678510049999888689688988983074469999612443400325754689999----9999999999999999
Q ss_pred HHHHHHHCH-HHHHH
Q ss_conf 999996120-33221
Q gi|254781228|r 60 IIDELVKGE-RNKWR 73 (87)
Q Consensus 60 iidelvkge-rnkwr 73 (87)
.+.||++-- ..||.
T Consensus 218 ~q~el~~~~gk~K~~ 232 (549)
T 3gme_A 218 NINELVKEAGKPRWD 232 (549)
T ss_dssp HHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 999999972998641
No 2
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=30.37 E-value=22 Score=16.94 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=34.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH-HHHHHC
Q ss_conf 552688873243136888876432011216899999999999996120-332210
Q gi|254781228|r 21 QDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGE-RNKWRQ 74 (87)
Q Consensus 21 qdsvlilrlglgtvsedilrhieleakdsanellkplrkiidelvkge-rnkwrq 74 (87)
.|+|+.+--|-.-+||+.+ ++|-.-|.+-.+++-+.+.||++-- +.||.-
T Consensus 189 ~daI~MVE~~A~EvsEe~m----leAI~~ahe~iq~iI~~q~eL~~~~Gk~K~e~ 239 (723)
T 3cdi_A 189 EAAVLMVESEAQLLSEDQM----LGAVVFGHEQQQVVIQNINELVKEAGKPRWDW 239 (723)
T ss_dssp SSCEEEEEEEEEEECHHHH----HHHHHHHHHHTHHHHHHHHHHHHHTCCCCCCC
T ss_pred CCEEEEEECCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7718998346755799999----99999888999999999999999858996423
No 3
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 1.96A {Streptococcus pneumoniae TIGR4}
Probab=22.43 E-value=47 Score=15.12 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHCHH
Q ss_conf 99999999999961203
Q gi|254781228|r 53 LLKPLRKIIDELVKGER 69 (87)
Q Consensus 53 llkplrkiidelvkger 69 (87)
-..-|-|.||||.||..
T Consensus 95 ~iRyLDKLVDELAKGk~ 111 (123)
T 3c9p_A 95 EIRRLDKLVDWLAKGKT 111 (123)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999999976781
No 4
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=18.53 E-value=56 Score=14.71 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=21.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCH
Q ss_conf 32011216899999999999996120
Q gi|254781228|r 43 ELEAKDSANELLKPLRKIIDELVKGE 68 (87)
Q Consensus 43 eleakdsanellkplrkiidelvkge 68 (87)
-|.||...||....|..|-||.+|..
T Consensus 28 flkakekineifeklntirdevikkk 53 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99889999999999968899998830
No 5
>2pyq_A Uncharacterized protein; YP_512017.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=10.85 E-value=95 Score=13.42 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=22.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCHHHHHHC
Q ss_conf 2011216899999999999996120332210
Q gi|254781228|r 44 LEAKDSANELLKPLRKIIDELVKGERNKWRQ 74 (87)
Q Consensus 44 leakdsanellkplrkiidelvkgernkwrq 74 (87)
|--.|+ .+|-....+.++..-+++|||.|-
T Consensus 68 LGl~d~-~~ld~aI~~v~e~~gks~r~K~Ra 97 (114)
T 2pyq_A 68 LGLADS-ESLMGGIQSVIETYGRSERNKYRA 97 (114)
T ss_dssp SCCCSS-HHHHHHHHHHHHHHCTTCSCCBHH
T ss_pred HCCCCC-HHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 189973-889999999999980456776314
No 6
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str}
Probab=10.67 E-value=46 Score=15.19 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=23.3
Q ss_pred CCCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 88888404557764407552688873243136888876
Q gi|254781228|r 4 TPWNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRH 41 (87)
Q Consensus 4 tpwngpkfdvltrriadqdsvlilrlglgtvsedilrh 41 (87)
..||+-||+|...-+..-.-.-+.-|.+.|-+.|.-|-
T Consensus 42 ~t~N~kK~~vi~~il~~~~~~~~~~l~i~Tn~aDlTRm 79 (156)
T 3brc_A 42 PNWNAEKVDAINDVLRSFNLREAEHLQFNTNWADLTRM 79 (156)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCCEECCSCCGGGGGSSS
T ss_pred ECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHCCCC
T ss_conf 56970677999999998168630046546760011137
No 7
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, RHH motif, structural genomics; 1.49A {Mycobacterium tuberculosis}
Probab=9.18 E-value=1.1e+02 Score=13.17 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHCCC---CHHHHHH
Q ss_conf 1368888764320112---1689999
Q gi|254781228|r 33 TVSEDILRHIELEAKD---SANELLK 55 (87)
Q Consensus 33 tvsedilrhieleakd---sanellk 55 (87)
.+|++.+-+|.-+|+. |-||.|+
T Consensus 8 gl~~~vl~~iD~~A~~~GlSRnE~L~ 33 (73)
T 3h87_C 8 DIPDDVLASLDAIAARLGLSRTEYIR 33 (73)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 79999999977899983876889999
No 8
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=7.62 E-value=64 Score=14.36 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=15.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 876432011216899999999
Q gi|254781228|r 39 LRHIELEAKDSANELLKPLRK 59 (87)
Q Consensus 39 lrhieleakdsanellkplrk 59 (87)
+|||-+..++.|++++.-|+.
T Consensus 7 v~hIl~~~~~~A~~i~~~l~~ 27 (93)
T 1zk6_A 7 ASHILVADKKTAEEVEKKLKK 27 (93)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHC
T ss_conf 999997899999999999887
No 9
>1o8r_A Guanylin; prohormone, GAP-I, precursor, prosequence; NMR {Homo sapiens} SCOP: d.234.1.1
Probab=7.13 E-value=1.4e+02 Score=12.54 Aligned_cols=26 Identities=35% Similarity=0.772 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHC
Q ss_conf 112168999999999999961203322104687236876509
Q gi|254781228|r 46 AKDSANELLKPLRKIIDELVKGERNKWRQSDNPDDDVCEVCQ 87 (87)
Q Consensus 46 akdsanellkplrkiidelvkgernkwrqsdnpdddvcevcq 87 (87)
....|.+.+.-|+-|+. |.|.||.|-
T Consensus 62 ~~~~A~~i~~rL~~ia~----------------d~d~CEICa 87 (94)
T 1o8r_A 62 KEPNAQEILQRLEEIAE----------------DPGTCEICA 87 (94)
T ss_dssp TSTTHHHHHHHHHHHHT----------------CCTTTTTTS
T ss_pred CCCCHHHHHHHHHHHCC----------------CCCCCCCCC
T ss_conf 79588999999998627----------------987310132
No 10
>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} SCOP: d.26.1.1 PDB: 1fjd_A
Probab=6.83 E-value=71 Score=14.13 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 876432011216899999999
Q gi|254781228|r 39 LRHIELEAKDSANELLKPLRK 59 (87)
Q Consensus 39 lrhieleakdsanellkplrk 59 (87)
.|||-++++..|+++++-|+.
T Consensus 5 vrHIlv~~~~~a~~i~~~l~~ 25 (96)
T 1eq3_A 5 VRHILCEKHGKIMEAMEKLKS 25 (96)
T ss_dssp EEEEEECCCSTHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHHHHC
T ss_conf 999998688999999999887
Done!