BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781228|ref|YP_003065641.1| hypothetical protein
CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781228|ref|YP_003065641.1| hypothetical protein CLIBASIA_05675 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040905|gb|ACT57701.1| hypothetical protein CLIBASIA_05675 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|317120735|gb|ADV02557.1| hypothetical protein SC2_gp180 [Liberibacter phage SC2]
 gi|317120796|gb|ADV02617.1| hypothetical protein SC2_gp180 [Candidatus Liberibacter
          asiaticus]
          Length = 87

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MTNTPWNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKI 60
          MTNTPWNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKI
Sbjct: 1  MTNTPWNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKI 60

Query: 61 IDELVKGERNKWRQSDNPDDDVCEVCQ 87
          IDELVKGERNKWRQSDNPDDDVCEVCQ
Sbjct: 61 IDELVKGERNKWRQSDNPDDDVCEVCQ 87


>gi|332526209|ref|ZP_08402342.1| hypothetical protein RBXJA2T_10134 [Rubrivivax benzoatilyticus JA2]
 gi|332110047|gb|EGJ10675.1| hypothetical protein RBXJA2T_10134 [Rubrivivax benzoatilyticus JA2]
          Length = 229

 Score = 37.3 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 36  EDILRHIELEAKDSANELLKPLRKIIDELVKGE-RNKWRQS 75
           EDI+ H  L   D A  LL PLR++++E ++G+    WRQ+
Sbjct: 184 EDIVVHRFLHGDDPAQRLLNPLRRLVEEGLRGDAMAHWRQA 224


>gi|228472665|ref|ZP_04057425.1| nucleoid-associated protein NdpA [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276078|gb|EEK14834.1| nucleoid-associated protein NdpA [Capnocytophaga gingivalis ATCC
           33624]
          Length = 346

 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 4   TPWNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDE 63
           T W   + + LT    D+ + L    GL  +S   ++ I+++ K+++ E    L + IDE
Sbjct: 164 TDWKAIENEDLT---TDRKTYLSFVKGLKDISLYFMQFIDVDNKNTSTESTNRLLRAIDE 220

Query: 64  LVKGERNKWRQSDNPDDDVCEVC 86
             K E     +     DDVC  C
Sbjct: 221 FAKREGWDKERKIQRQDDVCSYC 243


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.317    0.137    0.409 

Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 833,461,915
Number of Sequences: 14124377
Number of extensions: 28080619
Number of successful extensions: 93141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 93137
Number of HSP's gapped (non-prelim): 5
length of query: 87
length of database: 4,842,793,630
effective HSP length: 57
effective length of query: 30
effective length of database: 4,037,704,141
effective search space: 121131124230
effective search space used: 121131124230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)