RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781228|ref|YP_003065641.1| hypothetical protein
CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
(87 letters)
>gnl|CDD|180683 PRK06762, PRK06762, hypothetical protein; Provisional.
Length = 166
Score = 26.9 bits (60), Expect = 1.3
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 28 RLGLGT--VSEDILRHIELEAKDSANELLKPLRKIIDELVK 66
RLG GT VS+D++R L KD L L I++LV+
Sbjct: 25 RLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDL---IEQLVR 62
>gnl|CDD|180341 PRK05990, PRK05990, precorrin-2 C(20)-methyltransferase; Reviewed.
Length = 241
Score = 25.7 bits (57), Expect = 2.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 12 DVLTRRIADQDSVLILRLG 30
+ L RR+AD D+ +I++LG
Sbjct: 165 EELRRRLADADAAVIMKLG 183
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this family
are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes,
closely related to xanthine dehydrogenase/oxidase.
Length = 1330
Score = 25.4 bits (55), Expect = 3.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 44 LEAKDSANELLKPLRKIIDELVKGERNKWRQS 75
L KD+ LLK L II + +G W Q+
Sbjct: 1089 LAVKDACQTLLKRLEPIISKNPQGTWKDWAQT 1120
>gnl|CDD|168930 PRK07377, PRK07377, hypothetical protein; Provisional.
Length = 184
Score = 25.4 bits (56), Expect = 3.6
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 12/44 (27%)
Query: 23 SVLILRLGLGTVSEDILRHIELEAK--DSANELLKPLRKIIDEL 64
S L++RLG+ +E+E + ++L+ LR I+D+
Sbjct: 73 SSLVMRLGV----------LEIETETSSVFDQLIDQLRTILDKY 106
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
Length = 751
Score = 25.4 bits (56), Expect = 3.8
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 36 EDILRHIELEAKDSANELLK--PLRKIID 62
DILR +E+E++ A+ K L KI +
Sbjct: 319 TDILREVEIESERVAHGKAKLSLLDKIEN 347
>gnl|CDD|185579 PTZ00370, PTZ00370, STEVOR; Provisional.
Length = 296
Score = 25.0 bits (55), Expect = 4.4
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 57 LRKIIDELVKGERNKWRQSDNP 78
L++IID++ + K++Q+ +P
Sbjct: 59 LKEIIDKMNEEAIKKYQQTHDP 80
>gnl|CDD|178138 PLN02523, PLN02523, galacturonosyltransferase.
Length = 559
Score = 24.8 bits (54), Expect = 4.7
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 32 GTVSEDILRHIELEAKDSANELLKPLRKIIDE 63
+ ED+LR E E K+ +K R++I E
Sbjct: 140 SAIDEDVLRQFEKEVKE----RVKVARQMIAE 167
>gnl|CDD|184510 PRK14105, PRK14105, selenophosphate synthetase; Provisional.
Length = 345
Score = 24.7 bits (54), Expect = 5.1
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 8 GPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVK 66
G + D+LT+ A + VLIL LGT S L + E +D + + II++ ++
Sbjct: 154 GKEEDILTKAGAKEGDVLILTKPLGTQSAMALSRVPEEFEDLIDITKEEKEYIINKAIE 212
>gnl|CDD|178127 PLN02511, PLN02511, hydrolase.
Length = 388
Score = 24.7 bits (54), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 16 RRIADQDSVLILRLGLGTVSED-ILRHIELEAK 47
R + VLIL GL S+D +RH+ L A+
Sbjct: 94 RALPADAPVLILLPGLTGGSDDSYVRHMLLRAR 126
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The E1 ortholog from Corynebacterium glutamicum is
unusual in having an N-terminal extension that resembles
the dihydrolipoamide succinyltransferase (E2) component
of 2-oxoglutarate dehydrogenase.
Length = 929
Score = 24.1 bits (52), Expect = 8.0
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 21 QDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGERNKWRQ 74
++SVL G T S L E + D AN + +ID+ + KW Q
Sbjct: 656 EESVLGFEYGYATTSPRTLVIWEAQFGDFANGA----QVVIDQFISSGEQKWGQ 705
>gnl|CDD|183822 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 24.0 bits (52), Expect = 8.2
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 27 LRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGERNKWRQSDNPD 79
++ L ++S+D LR +E K L+P+ + +L ++ DNPD
Sbjct: 30 IQASLASLSDDALREKGMELKSRVRGALEPIEQKKKDL-------EKKLDNPD 75
>gnl|CDD|163036 TIGR02827, RNR_anaer_Bdell, anaerobic ribonucleoside-triphosphate
reductase. Members of this family belong to the class
III anaerobic ribonucleoside-triphosphate reductases
(RNR). These glycine-radical-containing enzymes are
oxygen-sensitive and operate under anaerobic conditions.
The genes for this family are pair with genes for an
acitivating protein that creates a glycine radical.
Members of this family, though related, fall outside the
scope of TIGR02487, a functionally equivalent protein
set; no genome has members in both familes.
Identification as RNR is supported by gene pairing with
the activating protein, lack of other anaerobic RNR, and
presence of an upstream regulatory element strongly
conserved upstream of most RNR operons.
Length = 586
Score = 24.0 bits (52), Expect = 8.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 58 RKIIDELVKGERNKWRQSDNPD 79
R I EL +G SD+ D
Sbjct: 272 RFIAQELAQGNSFFIYMSDSAD 293
>gnl|CDD|116940 pfam08359, TetR_C_4, YsiA-like protein, C-terminal region. The
members of this family are thought to be TetR-type
transcriptional regulators that bear particular
similarity to YsiA, a hypothetical protein expressed by
B. subtilis.
Length = 133
Score = 24.3 bits (53), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 31 LGTVSEDILRHIELEAKDSANELLKPLRKIIDELV 65
L V++ LR LE + NE+LK +IDE++
Sbjct: 43 LAIVTQLELRQSNLELRQKINEVLKGYLTLIDEII 77
>gnl|CDD|162883 TIGR02487, NrdD, anaerobic ribonucleoside-triphosphate reductase.
This model represents the oxygen-sensitive (anaerobic,
class III) ribonucleotide reductase. The mechanism of
the enzyme involves a glycine-centered radical, a
C-terminal zinc binding site, and a set of conserved
active site cysteines and asparagines. This enzyme
requires an activating component, NrdG, a radical-SAM
domain containing enzyme (TIGR02491). Together the two
form an alpha-2/beta-2 heterodimer.
Length = 579
Score = 24.2 bits (53), Expect = 8.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 41 HIELEAKDSANELLKPLRKIIDELVKGERNKWRQSDNPDDDVCEVCQ 87
+IEL D A + L+ I + +K + NP DVCE C
Sbjct: 490 YIEL---DEAIPDPEALKDITKKAMKNGIGYF--GINPPVDVCEDCG 531
>gnl|CDD|180119 PRK05500, PRK05500, bifunctional orotidine 5'-phosphate
decarboxylase/orotate phosphoribosyltransferase
protein; Validated.
Length = 477
Score = 23.9 bits (52), Expect = 8.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 11 FDVLTRRIADQDSVLILRL 29
FD LT+ IA S+L++ L
Sbjct: 4 FDKLTQAIAQNQSLLVVGL 22
>gnl|CDD|182760 PRK10826, PRK10826, 2-deoxyglucose-6-phosphatase; Provisional.
Length = 222
Score = 23.7 bits (52), Expect = 9.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 5 PWNGPKFDVLTRRIADQDSVLILRLG 30
PWNGP + +RI + LI
Sbjct: 66 PWNGPSRQEVVQRIIARVISLIEETR 91
>gnl|CDD|179742 PRK04123, PRK04123, ribulokinase; Provisional.
Length = 548
Score = 24.0 bits (53), Expect = 9.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 10/38 (26%)
Query: 6 WNGPKFDVLTRR--IADQD-SVLILRLGLGTVSEDILR 40
+NG RR +ADQ +I L LGT + DI R
Sbjct: 385 FNG-------RRTPLADQRLKGVITGLTLGTDAPDIYR 415
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.137 0.409
Gapped
Lambda K H
0.267 0.0836 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,439,967
Number of extensions: 78430
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 35
Length of query: 87
Length of database: 5,994,473
Length adjustment: 56
Effective length of query: 31
Effective length of database: 4,784,425
Effective search space: 148317175
Effective search space used: 148317175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (22.8 bits)