RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781228|ref|YP_003065641.1| hypothetical protein
CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)



>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin;
          NMR {Homo sapiens} (A:)
          Length = 96

 Score = 26.0 bits (57), Expect = 1.9
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 39 LRHIELEAKDSANELLKPLRK 59
          +RHI  E      E ++ L+ 
Sbjct: 5  VRHILCEKHGKIMEAMEKLKS 25


>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta
          sandwich, CIS peptide bond; NMR {Escherichia coli} (A:)
          Length = 92

 Score = 24.8 bits (54), Expect = 3.8
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 39 LRHIELEAKDSANELLKPLRK 59
            HI ++ +  A +LL+ ++ 
Sbjct: 6  ALHILVKEEKLALDLLEQIKN 26


>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase,
          parvulin, cell inner membrane, cell membrane, membrane,
          rotamase, stress response; NMR {Escherichia coli} (A:)
          Length = 102

 Score = 24.8 bits (54), Expect = 4.1
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 39 LRHIELEAKDSANELLKPLRK 59
             I+ + +D A  +L  L K
Sbjct: 8  YSIIQTKTEDEAKAVLDELNK 28


>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR
          {Bacillus subtilis} (A:)
          Length = 93

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 39 LRHIELEAKDSANELLKPLRK 59
            HI +  K +A E+ K L+K
Sbjct: 7  ASHILVADKKTAEEVEKKLKK 27


>1jmv_A USPA, universal stress protein A; chaperone; 1.85A
           {Haemophilus influenzae} (A:)
          Length = 141

 Score = 24.7 bits (53), Expect = 5.1
 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 7/43 (16%)

Query: 6   WNGPKFDVLTRRIADQDSVLIL-------RLGLGTVSEDILRH 41
            +G    VL+  I   D  L++          L + +  ++  
Sbjct: 86  GSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNT 128


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 24.1 bits (52), Expect = 6.5
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 33/83 (39%)

Query: 9   PKFDV------LTRRIAD-----QDSVLILRLGLGTVS-EDI-------LRHIELEA--- 46
           P  ++      L  R A      ++ +  L+L    +  ED         R I  EA   
Sbjct: 22  PNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQ 81

Query: 47  -KDS----ANELLK------PLR 58
            + +     N+  K      PLR
Sbjct: 82  LRAAQQQWGNDFYKRDPRIAPLR 104


>2pyq_A Uncharacterized protein; YP_512017.1, structural genomics,
          joint center for structural genomics, JCSG, protein
          structure initiative, PSI-2; HET: MSE; 1.50A
          {Jannaschia SP} (A:)
          Length = 114

 Score = 23.9 bits (52), Expect = 8.0
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 31 LGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGERNKWR 73
          L T+ ++ L   +L   DS   L   ++ +I+   + ERNK+R
Sbjct: 56 LETIKKNFLXK-KLGLADSE-SLXGGIQSVIETYGRSERNKYR 96


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 690,731
Number of extensions: 26133
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 15
Length of query: 87
Length of database: 4,956,049
Length adjustment: 49
Effective length of query: 38
Effective length of database: 3,299,604
Effective search space: 125384952
Effective search space used: 125384952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)