HHsearch alignment for GI: 255764460 and conserved domain: CHL00059
>CHL00059 atpA ATP synthase CF1 alpha subunit.
Probab=98.19 E-value=1.5e-05 Score=54.72 Aligned_cols=110 Identities=19% Similarity=0.341 Sum_probs=74.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCC-HHHHHHH---CCCH
Q ss_conf 55014772789997238972688079997068723789999998752008987999973-88556-6889981---9883
Q gi|255764460|r 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA-EHALD-SIYARKL---GVDL 119 (363)
Q Consensus 45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~-E~~~~-~~~a~~~---Gvd~ 119 (363)
T Consensus 144 ~epL~TGIkaID~l~P---iGrGQR~lI~Gd~gvGKTtl~~d~Iinqk~~~vicVyvaIGeR~reV~~~i~~l~~~ga-m 219 (501)
T CHL00059 144 YEPLQTGLIAIDSMIP---IGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGA-M 219 (501)
T ss_pred CCCCCCCCEEEECCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCC-C
T ss_conf 7423234211100367---66775667755788447799999998524688489999855627789999999975697-1
Q ss_pred HH--EEEEECC-C-HHH------HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 34--4897258-4-899------99999999744897689981433322
Q gi|255764460|r 120 KN--LLISQPD-T-GEQ------ALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 120 ~~--l~~~~~~-~-~E~------~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 220 ~~TvvV~Atadepa~lr~~Apyaa~aIAEyFrdqGkdVLlv~DdLTr~A 268 (501)
T CHL00059 220 EYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA 268 (501)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
T ss_conf 0369996179999999999999999999999977982899986826988