HHsearch alignment for GI: 255764460 and conserved domain: CHL00059

>CHL00059 atpA ATP synthase CF1 alpha subunit.
Probab=98.19  E-value=1.5e-05  Score=54.72  Aligned_cols=110  Identities=19%  Similarity=0.341  Sum_probs=74.5

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCC-HHHHHHH---CCCH
Q ss_conf             55014772789997238972688079997068723789999998752008987999973-88556-6889981---9883
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDA-EHALD-SIYARKL---GVDL  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~-E~~~~-~~~a~~~---Gvd~  119 (363)
T Consensus       144 ~epL~TGIkaID~l~P---iGrGQR~lI~Gd~gvGKTtl~~d~Iinqk~~~vicVyvaIGeR~reV~~~i~~l~~~ga-m  219 (501)
T CHL00059        144 YEPLQTGLIAIDSMIP---IGRGQRELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGA-M  219 (501)
T ss_pred             CCCCCCCCEEEECCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHHHCCC-C
T ss_conf             7423234211100367---66775667755788447799999998524688489999855627789999999975697-1


Q ss_pred             HH--EEEEECC-C-HHH------HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             34--4897258-4-899------99999999744897689981433322
Q gi|255764460|r  120 KN--LLISQPD-T-GEQ------ALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       120 ~~--l~~~~~~-~-~E~------~~~i~~~li~~~~~~liViDSi~al~  158 (363)
T Consensus       220 ~~TvvV~Atadepa~lr~~Apyaa~aIAEyFrdqGkdVLlv~DdLTr~A  268 (501)
T CHL00059        220 EYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQA  268 (501)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
T ss_conf             0369996179999999999999999999999977982899986826988