HHsearch alignment for GI: 255764460 and conserved domain: CHL00060
>CHL00060 atpB ATP synthase CF1 beta subunit.
Probab=97.77 E-value=0.00054 Score=44.84 Aligned_cols=140 Identities=18% Similarity=0.317 Sum_probs=81.3
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCH--HHHH---HHCC-
Q ss_conf 550147727899972389726880799970687237899999987520-08987999973885566--8899---8198-
Q gi|255764460|r 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDS--IYAR---KLGV- 117 (363)
Q Consensus 45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~--~~a~---~~Gv- 117 (363)
T Consensus 136 ~e~leTGIkaID~l~p---igkGQRigIfggaGvGKTvLl~eli~niak~~~~v~V~a~IGER~RE~~e~~~e~~e~gvl 212 (480)
T CHL00060 136 LSIFETGIKVVDLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVI 212 (480)
T ss_pred CCCHHCCHHHHHCCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 8611027044431254---0036688765689988789999999612003798899999667736799999999871855
Q ss_pred CH-----HHE--EEEECCC--------HHHHHHHHHHHHHCCCCC-EEEEECCCCCC-CHHHHHHHHHH-----HCCCHH
Q ss_conf 83-----344--8972584--------899999999997448976-89981433322-02655434555-----302247
Q gi|255764460|r 118 DL-----KNL--LISQPDT--------GEQALEITDMLVRSGAVD-IIVIDSVAALT-PRAEIEGDMGE-----SLPGMQ 175 (363)
Q Consensus 118 d~-----~~l--~~~~~~~--------~E~~~~i~~~li~~~~~~-liViDSi~al~-p~~Eie~~~~d-----~~~g~~ 175 (363)
T Consensus 213 ~~~~~~~s~~vlV~~~~depp~~R~~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppsl 292 (480)
T CHL00060 213 NEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTL 292 (480)
T ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 33554430489997356787688999999988899999874897089995462899988878998627999866789648
Q ss_pred HHHHHHHHHHHH
Q ss_conf 888767767777
Q gi|255764460|r 176 ARLMSQALRKLT 187 (363)
Q Consensus 176 ar~ms~~lrkl~ 187 (363)
T Consensus 293 f~~l~~L~ER~~ 304 (480)
T CHL00060 293 STEMGSLQERIT 304 (480)
T ss_pred HHHHHHHHHHHC
T ss_conf 888778888632