HHsearch alignment for GI: 255764460 and conserved domain: CHL00060

>CHL00060 atpB ATP synthase CF1 beta subunit.
Probab=97.77  E-value=0.00054  Score=44.84  Aligned_cols=140  Identities=18%  Similarity=0.317  Sum_probs=81.3

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCH--HHHH---HHCC-
Q ss_conf             550147727899972389726880799970687237899999987520-08987999973885566--8899---8198-
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDS--IYAR---KLGV-  117 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~--~~a~---~~Gv-  117 (363)
T Consensus       136 ~e~leTGIkaID~l~p---igkGQRigIfggaGvGKTvLl~eli~niak~~~~v~V~a~IGER~RE~~e~~~e~~e~gvl  212 (480)
T CHL00060        136 LSIFETGIKVVDLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVI  212 (480)
T ss_pred             CCCHHCCHHHHHCCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             8611027044431254---0036688765689988789999999612003798899999667736799999999871855


Q ss_pred             CH-----HHE--EEEECCC--------HHHHHHHHHHHHHCCCCC-EEEEECCCCCC-CHHHHHHHHHH-----HCCCHH
Q ss_conf             83-----344--8972584--------899999999997448976-89981433322-02655434555-----302247
Q gi|255764460|r  118 DL-----KNL--LISQPDT--------GEQALEITDMLVRSGAVD-IIVIDSVAALT-PRAEIEGDMGE-----SLPGMQ  175 (363)
Q Consensus       118 d~-----~~l--~~~~~~~--------~E~~~~i~~~li~~~~~~-liViDSi~al~-p~~Eie~~~~d-----~~~g~~  175 (363)
T Consensus       213 ~~~~~~~s~~vlV~~~~depp~~R~~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppsl  292 (480)
T CHL00060        213 NEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTL  292 (480)
T ss_pred             CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf             33554430489997356787688999999988899999874897089995462899988878998627999866789648


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             888767767777
Q gi|255764460|r  176 ARLMSQALRKLT  187 (363)
Q Consensus       176 ar~ms~~lrkl~  187 (363)
T Consensus       293 f~~l~~L~ER~~  304 (480)
T CHL00060        293 STEMGSLQERIT  304 (480)
T ss_pred             HHHHHHHHHHHC
T ss_conf             888778888632