HHsearch alignment for GI: 255764460 and conserved domain: COG0324
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis].
Probab=96.37 E-value=0.014 Score=35.81 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=50.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECC--------CCCCHHHHHHHCCC---HHHE----EEEECCCHHH
Q ss_conf 0799970687237899999987520089879999738--------85566889981988---3344----8972584899
Q gi|255764460|r 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAE--------HALDSIYARKLGVD---LKNL----LISQPDTGEQ 132 (363)
Q Consensus 68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E--------~~~~~~~a~~~Gvd---~~~l----~~~~~~~~E~ 132 (363)
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk---~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~ 80 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAK---RLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRD 80 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHH---HCCCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 3799989887577899999999---8299289302355318886307999999985899787545683225549999999
Q ss_pred HHHHHHHHHHCCCCCEEE
Q ss_conf 999999997448976899
Q gi|255764460|r 133 ALEITDMLVRSGAVDIIV 150 (363)
Q Consensus 133 ~~~i~~~li~~~~~~liV 150 (363)
T Consensus 81 a~~~i~~i~~rgk~pIlV 98 (308)
T COG0324 81 ALAAIDDILARGKLPILV 98 (308)
T ss_pred HHHHHHHHHHCCCCCEEE
T ss_conf 999999999689987997