HHsearch alignment for GI: 255764460 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=99.73 E-value=3.3e-15 Score=115.78 Aligned_cols=212 Identities=24% Similarity=0.353 Sum_probs=132.7
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHHE
Q ss_conf 55014772789997238972688079997068723789999998752008987999973885566--8899819883344
Q gi|255764460|r 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKNL 122 (363)
Q Consensus 45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~l 122 (363)
T Consensus 2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~ 80 (260)
T COG0467 2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY 80 (260)
T ss_pred CCCCCCCCCCHHHHHC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHH
T ss_conf 8656899741888836-898899789999389986899999999977626985899992069899999998809977897
Q ss_pred ------EEEEC---------------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf ------89725---------------848999999999974489768998143332202655434555302247888767
Q gi|255764460|r 123 ------LISQP---------------DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQ 181 (363)
Q Consensus 123 ------~~~~~---------------~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~ 181 (363)
T Consensus 81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~--~~---------~~~~~-r~ 148 (260)
T COG0467 81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLY--LN---------DPALV-RR 148 (260)
T ss_pred HHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH--CC---------CHHHH-HH
T ss_conf 54440687631211125420104665228999999999998628988999663077665--27---------82578-99
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCC
Q ss_conf 76777764201781899986341145665466512565531111112489750455344577247679998774057789
Q gi|255764460|r 182 ALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMAS 261 (363)
Q Consensus 182 ~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~ 261 (363)
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~~~~~--------~~~-~~~~~~vdgvI~l~~~~~--~~--~~~r~-~~~i~k~r~~~ 214 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAPVEER--------GES-GVEEYIVDGVIRLDLKEI--EG--GGDRR-YLRILKMRGTP 214 (260)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCC--------CCC-CCEEEEEEEEEEEEEEEC--CC--CEEEE-EEEEEECCCCC
T ss_conf 999999876506848999974433466--------656-614216899999977722--57--24888-99998346733
Q ss_pred C-CCEEEEEEECCCCCCCCCHHH
Q ss_conf 8-515899986187423111599
Q gi|255764460|r 262 P-FKQVEFDIMYGEGISFFGELI 283 (363)
Q Consensus 262 P-~~~a~~~i~fg~GI~~~~~ll 283 (363)
T Consensus 215 ~~~~~~~~~i~~g~gi~i~~~~~ 237 (260)
T COG0467 215 HSLKVIPFEITDGEGIVVYPEGR 237 (260)
T ss_pred CCCCEEEEEEECCCCEEEECCCC
T ss_conf 57745999982788479934640