HHsearch alignment for GI: 255764460 and conserved domain: COG0541

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.59  E-value=0.0015  Score=42.02  Aligned_cols=104  Identities=20%  Similarity=0.244  Sum_probs=63.9

Q ss_pred             HHHHHHHCCCCC------CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH---CCCHHHEE
Q ss_conf             789997238972------688079997068723789999998752008987999973885566889981---98833448
Q gi|255764460|r   53 LGLDIALGIGGF------PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL---GVDLKNLL  123 (363)
Q Consensus        53 ~~lD~~Lg~GG~------p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~---Gvd~~~l~  123 (363)
T Consensus        80 eELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD-~~RpAA~eQL~~La~q~~v~~  158 (451)
T COG0541          80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD-TYRPAAIEQLKQLAEQVGVPF  158 (451)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCCE
T ss_conf             9999984888766503789985899981567974868999999999749945898505-678689999999998609853


Q ss_pred             EEECCCHHHHHHHHHH---HHHCCCCCEEEEECCCCCC
Q ss_conf             9725848999999999---9744897689981433322
Q gi|255764460|r  124 ISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       124 ~~~~~~~E~~~~i~~~---li~~~~~~liViDSi~al~  158 (363)
T Consensus       159 f~-~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~  195 (451)
T COG0541         159 FG-SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH  195 (451)
T ss_pred             EC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             16-77889979999999999997499889996887330