HHsearch alignment for GI: 255764460 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.59 E-value=0.0015 Score=42.02 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=63.9
Q ss_pred HHHHHHHCCCCC------CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH---CCCHHHEE
Q ss_conf 789997238972------688079997068723789999998752008987999973885566889981---98833448
Q gi|255764460|r 53 LGLDIALGIGGF------PKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL---GVDLKNLL 123 (363)
Q Consensus 53 ~~lD~~Lg~GG~------p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~---Gvd~~~l~ 123 (363)
T Consensus 80 eELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD-~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD-TYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCCE
T ss_conf 9999984888766503789985899981567974868999999999749945898505-678689999999998609853
Q ss_pred EEECCCHHHHHHHHHH---HHHCCCCCEEEEECCCCCC
Q ss_conf 9725848999999999---9744897689981433322
Q gi|255764460|r 124 ISQPDTGEQALEITDM---LVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 124 ~~~~~~~E~~~~i~~~---li~~~~~~liViDSi~al~ 158 (363)
T Consensus 159 f~-~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ 195 (451)
T COG0541 159 FG-SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH 195 (451)
T ss_pred EC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 16-77889979999999999997499889996887330