HHsearch alignment for GI: 255764460 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=99.85 E-value=2.6e-19 Score=141.68 Aligned_cols=172 Identities=26% Similarity=0.361 Sum_probs=132.4
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCH
Q ss_conf 34655014772789997238972688079997068723789999998752008987999973885566--8899819883
Q gi|255764460|r 42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDL 119 (363)
Q Consensus 42 ~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~ 119 (363)
T Consensus 69 ~~~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~ 146 (456)
T COG1066 69 LEEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPT 146 (456)
T ss_pred EEECCCCCCCHHHHHHHHC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 2222423578188876536-7723661799736898779899999999987059-5799967767899999999828996
Q ss_pred HHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 34489725848999999999974489768998143332202655434555302247888767767777642017818999
Q gi|255764460|r 120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 (363)
Q Consensus 120 ~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~ 199 (363)
T Consensus 147 ~~l~l~aEt~~e~I~~~----l~~~~p~lvVIDSIQT~~s-~~~~SapG--sV-sQVRe~t~~---L~~~AK~~~i~~fi 215 (456)
T COG1066 147 NNLYLLAETNLEDIIAE----LEQEKPDLVVIDSIQTLYS-EEITSAPG--SV-SQVREVAAE---LMRLAKTKNIAIFI 215 (456)
T ss_pred CCEEEEHHCCHHHHHHH----HHHCCCCEEEEECCCEECC-CCCCCCCC--CH-HHHHHHHHH---HHHHHHHCCCEEEE
T ss_conf 45577411289999999----9854997899965412302-63357998--58-999999999---99999875973999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 86341145665466512565531111112489750
Q gi|255764460|r 200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR 234 (363)
Q Consensus 200 iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~ 234 (363)
T Consensus 216 VGHVTKeG-~-------IAGPrvLEHmVDtVlyFE 242 (456)
T COG1066 216 VGHVTKEG-A-------IAGPRVLEHMVDTVLYFE 242 (456)
T ss_pred EEEECCCC-C-------CCCCHHEEEEEEEEEEEE
T ss_conf 98882466-3-------268400436536899983