HHsearch alignment for GI: 255764460 and conserved domain: COG1066

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=99.85  E-value=2.6e-19  Score=141.68  Aligned_cols=172  Identities=26%  Similarity=0.361  Sum_probs=132.4

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCH
Q ss_conf             34655014772789997238972688079997068723789999998752008987999973885566--8899819883
Q gi|255764460|r   42 FEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDL  119 (363)
Q Consensus        42 ~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~  119 (363)
T Consensus        69 ~~~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~  146 (456)
T COG1066          69 LEEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPT  146 (456)
T ss_pred             EEECCCCCCCHHHHHHHHC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf             2222423578188876536-7723661799736898779899999999987059-5799967767899999999828996


Q ss_pred             HHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             34489725848999999999974489768998143332202655434555302247888767767777642017818999
Q gi|255764460|r  120 KNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF  199 (363)
Q Consensus       120 ~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~  199 (363)
T Consensus       147 ~~l~l~aEt~~e~I~~~----l~~~~p~lvVIDSIQT~~s-~~~~SapG--sV-sQVRe~t~~---L~~~AK~~~i~~fi  215 (456)
T COG1066         147 NNLYLLAETNLEDIIAE----LEQEKPDLVVIDSIQTLYS-EEITSAPG--SV-SQVREVAAE---LMRLAKTKNIAIFI  215 (456)
T ss_pred             CCEEEEHHCCHHHHHHH----HHHCCCCEEEEECCCEECC-CCCCCCCC--CH-HHHHHHHHH---HHHHHHHCCCEEEE
T ss_conf             45577411289999999----9854997899965412302-63357998--58-999999999---99999875973999


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             86341145665466512565531111112489750
Q gi|255764460|r  200 INQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIR  234 (363)
Q Consensus       200 iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~  234 (363)
T Consensus       216 VGHVTKeG-~-------IAGPrvLEHmVDtVlyFE  242 (456)
T COG1066         216 VGHVTKEG-A-------IAGPRVLEHMVDTVLYFE  242 (456)
T ss_pred             EEEECCCC-C-------CCCCHHEEEEEEEEEEEE
T ss_conf             98882466-3-------268400436536899983