HHsearch alignment for GI: 255764460 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.53 E-value=6.5e-13 Score=101.22 Aligned_cols=200 Identities=22% Similarity=0.339 Sum_probs=133.8
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH---HHHHCCCHHH--
Q ss_conf 01477278999723897268807999706872378999999875200898799997388556688---9981988334--
Q gi|255764460|r 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY---ARKLGVDLKN-- 121 (363)
Q Consensus 47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~---a~~~Gvd~~~-- 121 (363)
T Consensus 9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~-refi~qm~sl~ydv~~~~ 86 (235)
T COG2874 9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV-REFIKQMESLSYDVSDFL 86 (235)
T ss_pred HCCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHH-HHHHHHHHHCCCCCHHHH
T ss_conf 20678477786516-9974676999988898548899999999887089548999840359-999998886388716877
Q ss_pred ----EEEEECC---------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf ----4897258---------489999999999744897689981433322026554345553022478887677677776
Q gi|255764460|r 122 ----LLISQPD---------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS 188 (363)
Q Consensus 122 ----l~~~~~~---------~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~ 188 (363)
T Consensus 87 l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~-------------~vl~fm~~~r~ 153 (235)
T COG2874 87 LSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSED-------------AVLNFMTFLRK 153 (235)
T ss_pred HCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHH-------------HHHHHHHHHHH
T ss_conf 50626899932454225737789999999755775237789995343776526499-------------99999999999
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCCC--CE
Q ss_conf 420178189998634114566546651256553111111248975045534457724767999-877405778985--15
Q gi|255764460|r 189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASPF--KQ 265 (363)
Q Consensus 189 ~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P~--~~ 265 (363)
T Consensus 154 l~d~gKvIilTvhp~~------l-~e~~~~---rirs~~d~~l~L~~~~~-------Gg~~~~~~~i~K~~ga~~s~~~~ 216 (235)
T COG2874 154 LSDLGKVIILTVHPSA------L-DEDVLT---RIRSACDVYLRLRLEEL-------GGDLIKVLEIVKYRGARKSFQNI 216 (235)
T ss_pred HHHCCCEEEEEECHHH------C-CHHHHH---HHHHHHHEEEEEEHHHH-------CCEEEEEEEEEEECCCHHHCCCC
T ss_conf 8728978999947343------3-789999---99875202589870231-------78455877876654713321774
Q ss_pred EEEEEECCCCCCC
Q ss_conf 8999861874231
Q gi|255764460|r 266 VEFDIMYGEGISF 278 (363)
Q Consensus 266 a~~~i~fg~GI~~ 278 (363)
T Consensus 217 I~F~V~P~~Glkv 229 (235)
T COG2874 217 ISFRVEPGFGLKV 229 (235)
T ss_pred EEEEECCCCCEEE
T ss_conf 0588559875699