HHsearch alignment for GI: 255764460 and conserved domain: COG2874

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.53  E-value=6.5e-13  Score=101.22  Aligned_cols=200  Identities=22%  Similarity=0.339  Sum_probs=133.8

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH---HHHHCCCHHH--
Q ss_conf             01477278999723897268807999706872378999999875200898799997388556688---9981988334--
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIY---ARKLGVDLKN--  121 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~---a~~~Gvd~~~--  121 (363)
T Consensus         9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~-refi~qm~sl~ydv~~~~   86 (235)
T COG2874           9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV-REFIKQMESLSYDVSDFL   86 (235)
T ss_pred             HCCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHH-HHHHHHHHHCCCCCHHHH
T ss_conf             20678477786516-9974676999988898548899999999887089548999840359-999998886388716877


Q ss_pred             ----EEEEECC---------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             ----4897258---------489999999999744897689981433322026554345553022478887677677776
Q gi|255764460|r  122 ----LLISQPD---------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTS  188 (363)
Q Consensus       122 ----l~~~~~~---------~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~  188 (363)
T Consensus        87 l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~-------------~vl~fm~~~r~  153 (235)
T COG2874          87 LSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSED-------------AVLNFMTFLRK  153 (235)
T ss_pred             HCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHH-------------HHHHHHHHHHH
T ss_conf             50626899932454225737789999999755775237789995343776526499-------------99999999999


Q ss_pred             HHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCCC--CE
Q ss_conf             420178189998634114566546651256553111111248975045534457724767999-877405778985--15
Q gi|255764460|r  189 SISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASPF--KQ  265 (363)
Q Consensus       189 ~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P~--~~  265 (363)
T Consensus       154 l~d~gKvIilTvhp~~------l-~e~~~~---rirs~~d~~l~L~~~~~-------Gg~~~~~~~i~K~~ga~~s~~~~  216 (235)
T COG2874         154 LSDLGKVIILTVHPSA------L-DEDVLT---RIRSACDVYLRLRLEEL-------GGDLIKVLEIVKYRGARKSFQNI  216 (235)
T ss_pred             HHHCCCEEEEEECHHH------C-CHHHHH---HHHHHHHEEEEEEHHHH-------CCEEEEEEEEEEECCCHHHCCCC
T ss_conf             8728978999947343------3-789999---99875202589870231-------78455877876654713321774


Q ss_pred             EEEEEECCCCCCC
Q ss_conf             8999861874231
Q gi|255764460|r  266 VEFDIMYGEGISF  278 (363)
Q Consensus       266 a~~~i~fg~GI~~  278 (363)
T Consensus       217 I~F~V~P~~Glkv  229 (235)
T COG2874         217 ISFRVEPGFGLKV  229 (235)
T ss_pred             EEEEECCCCCEEE
T ss_conf             0588559875699