HHsearch alignment for GI: 255764460 and conserved domain: COG3598

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=98.28  E-value=2.9e-05  Score=52.87  Aligned_cols=130  Identities=22%  Similarity=0.312  Sum_probs=81.4

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHH----------HHHHCCCEEEEEECCCCCCHH-------HHHHHCCCHHHEEE
Q ss_conf             9726880799970687237899999987----------520089879999738855668-------89981988334489
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIA----------QSQKTGGTCAFVDAEHALDSI-------YARKLGVDLKNLLI  124 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a----------~~qk~g~~~~~iD~E~~~~~~-------~a~~~Gvd~~~l~~  124 (363)
T Consensus        84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~r-e~~L~Rl~~v~a~mgLsPadvrn  162 (402)
T COG3598          84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYR-EDILERLEPVRARMGLSPADVRN  162 (402)
T ss_pred             HHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCH-HHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             77651705898448862376899999999986477745335588807999822686-88999999999870998576322


Q ss_pred             EEC----------CCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             725----------84899-9999999974489768998143332202655434555302247888767767777642017
Q gi|255764460|r  125 SQP----------DTGEQ-ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS  193 (363)
Q Consensus       125 ~~~----------~~~E~-~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~  193 (363)
T Consensus       163 ~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~--------s~vqv~~fi~~~rkla~---~l  231 (402)
T COG3598         163 MDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSI--------SDVQVKEFIKKTRKLAR---NL  231 (402)
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCC--------HHHHHHHHHHHHHHHHH---HC
T ss_conf             00002456787200105899999999998747874997344542277411--------16899999999999998---62


Q ss_pred             CCEEEEEECC
Q ss_conf             8189998634
Q gi|255764460|r  194 KCILVFINQM  203 (363)
Q Consensus       194 ~~~~i~iNQ~  203 (363)
T Consensus       232 ~caIiy~hHt  241 (402)
T COG3598         232 ECAIIYIHHT  241 (402)
T ss_pred             CCEEEEEECC
T ss_conf             7739999445