HHsearch alignment for GI: 255764460 and conserved domain: PRK04301

>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=100.00  E-value=0  Score=313.64  Aligned_cols=229  Identities=24%  Similarity=0.389  Sum_probs=188.5

Q ss_pred             EEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH---C---CCEEEEEECCCC
Q ss_conf             9703665533465501477278999723897268807999706872378999999875200---8---987999973885
Q gi|255764460|r   33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK---T---GGTCAFVDAEHA  106 (363)
Q Consensus        33 ~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk---~---g~~~~~iD~E~~  106 (363)
T Consensus        70 ~Ta~el~~~r~~~~~isTg~~~lD~lLg-GGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgt  148 (318)
T PRK04301         70 ETALEVLERRKSIGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENT  148 (318)
T ss_pred             CCHHHHHHHHHCCCCCCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCC
T ss_conf             2699999986347824788878880547-983367078886688787035667767653376777898863799956898


Q ss_pred             CCHH----HHHHHCCC----HHHEEEEECCCHHHHHHHHH---HHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCH
Q ss_conf             5668----89981988----33448972584899999999---99744-8976899814333220265543455530224
Q gi|255764460|r  107 LDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRS-GAVDIIVIDSVAALTPRAEIEGDMGESLPGM  174 (363)
Q Consensus       107 ~~~~----~a~~~Gvd----~~~l~~~~~~~~E~~~~i~~---~li~~-~~~~liViDSi~al~p~~Eie~~~~d~~~g~  174 (363)
T Consensus       149 F~peRi~qia~~~g~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alf-R~e~~gr---g~l~~  224 (318)
T PRK04301        149 FRPERIEQMAEGLGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHF-RAEYVGR---GNLAE  224 (318)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHE-EECCCCC---CCHHH
T ss_conf             6979999999984999789864026861399899999999999999627880499994342321-2104685---30999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf             78887677677776420178189998634114566546651256553111111248975045534457724767999877
Q gi|255764460|r  175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV  254 (363)
Q Consensus       175 ~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv  254 (363)
T Consensus       225 Rq~~L~~~l~~L~~lA~~~niaVvvTNQV~~~~~~~~g~~~~P~gG~~~ah~~t~Rl~Lrk~~---------g~~R~~~l  295 (318)
T PRK04301        225 RQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTKPIGGHILGHTATFRIYLRKSK---------GDKRIARL  295 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEECC---------CCEEEEEE
T ss_conf             999999999999999998595799961367547655688763566214030151899999768---------98799999


Q ss_pred             EECCCCCCCCEEEEEEECCCCCC
Q ss_conf             40577898515899986187423
Q gi|255764460|r  255 VKNKMASPFKQVEFDIMYGEGIS  277 (363)
Q Consensus       255 ~Knk~~~P~~~a~~~i~fg~GI~  277 (363)
T Consensus       296 ~~SP~lPe~-~~~F~It-~~GI~  316 (318)
T PRK04301        296 VDSPHLPEG-EAVFRIT-EEGIR  316 (318)
T ss_pred             EECCCCCCE-EEEEEEC-CCCCC
T ss_conf             778899972-7899984-88637