HHsearch alignment for GI: 255764460 and conserved domain: PRK04301
>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=100.00 E-value=0 Score=313.64 Aligned_cols=229 Identities=24% Similarity=0.389 Sum_probs=188.5
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH---C---CCEEEEEECCCC
Q ss_conf 9703665533465501477278999723897268807999706872378999999875200---8---987999973885
Q gi|255764460|r 33 MQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK---T---GGTCAFVDAEHA 106 (363)
Q Consensus 33 ~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk---~---g~~~~~iD~E~~ 106 (363)
T Consensus 70 ~Ta~el~~~r~~~~~isTg~~~lD~lLg-GGi~~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgt 148 (318)
T PRK04301 70 ETALEVLERRKSIGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENT 148 (318)
T ss_pred CCHHHHHHHHHCCCCCCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCC
T ss_conf 2699999986347824788878880547-983367078886688787035667767653376777898863799956898
Q ss_pred CCHH----HHHHHCCC----HHHEEEEECCCHHHHHHHHH---HHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCH
Q ss_conf 5668----89981988----33448972584899999999---99744-8976899814333220265543455530224
Q gi|255764460|r 107 LDSI----YARKLGVD----LKNLLISQPDTGEQALEITD---MLVRS-GAVDIIVIDSVAALTPRAEIEGDMGESLPGM 174 (363)
Q Consensus 107 ~~~~----~a~~~Gvd----~~~l~~~~~~~~E~~~~i~~---~li~~-~~~~liViDSi~al~p~~Eie~~~~d~~~g~ 174 (363)
T Consensus 149 F~peRi~qia~~~g~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alf-R~e~~gr---g~l~~ 224 (318)
T PRK04301 149 FRPERIEQMAEGLGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHF-RAEYVGR---GNLAE 224 (318)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHE-EECCCCC---CCHHH
T ss_conf 6979999999984999789864026861399899999999999999627880499994342321-2104685---30999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf 78887677677776420178189998634114566546651256553111111248975045534457724767999877
Q gi|255764460|r 175 QARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKV 254 (363)
Q Consensus 175 ~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv 254 (363)
T Consensus 225 Rq~~L~~~l~~L~~lA~~~niaVvvTNQV~~~~~~~~g~~~~P~gG~~~ah~~t~Rl~Lrk~~---------g~~R~~~l 295 (318)
T PRK04301 225 RQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTKPIGGHILGHTATFRIYLRKSK---------GDKRIARL 295 (318)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCEEEEEEECC---------CCEEEEEE
T ss_conf 999999999999999998595799961367547655688763566214030151899999768---------98799999
Q ss_pred EECCCCCCCCEEEEEEECCCCCC
Q ss_conf 40577898515899986187423
Q gi|255764460|r 255 VKNKMASPFKQVEFDIMYGEGIS 277 (363)
Q Consensus 255 ~Knk~~~P~~~a~~~i~fg~GI~ 277 (363)
T Consensus 296 ~~SP~lPe~-~~~F~It-~~GI~ 316 (318)
T PRK04301 296 VDSPHLPEG-EAVFRIT-EEGIR 316 (318)
T ss_pred EECCCCCCE-EEEEEEC-CCCCC
T ss_conf 778899972-7899984-88637