HHsearch alignment for GI: 255764460 and conserved domain: PRK05636
>PRK05636 replicative DNA helicase; Provisional.
Probab=99.58 E-value=2e-12 Score=98.09 Aligned_cols=219 Identities=17% Similarity=0.193 Sum_probs=138.4
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHH-----HHCCCH
Q ss_conf 50147727899972389726880799970687237899999987520-089879999738855668899-----819883
Q gi|255764460|r 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIYAR-----KLGVDL 119 (363)
Q Consensus 46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~a~-----~~Gvd~ 119 (363)
T Consensus 248 ~Gi~TGf~~LD~~t--~Gl~~G~LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs~~q-l~~Rlla~~s~V~~ 324 (507)
T PRK05636 248 TGIPTGFKDLDDLT--NGLRGGQMIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMSKSE-IVMRLLSAEAEVRL 324 (507)
T ss_pred EEEECCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHHHHHHHHCCCCH
T ss_conf 25658808899755--0888356799973787866899999999999876993799715699899-99999998479887
Q ss_pred HHE-------------------------EEEE-C-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 344-------------------------8972-5-848999999999974489768998143332202655434555302
Q gi|255764460|r 120 KNL-------------------------LISQ-P-DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLP 172 (363)
Q Consensus 120 ~~l-------------------------~~~~-~-~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~ 172 (363)
T Consensus 325 ~~ir~g~l~~~~~~~l~~a~~~l~~~pl~IdD~~~lti~~Ira~aRrlk~~~~l~livVDYLQLm~~~~~~~-------- 396 (507)
T PRK05636 325 ADMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKMIVVDYLQLMSSGKRVE-------- 396 (507)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCC--------
T ss_conf 888558878899999999999986198899849997699999999999861799989984588456888876--------
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCCC--CCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf 2478887677677776420178189998634114566546-651256--5531111112489750455344577247679
Q gi|255764460|r 173 GMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETTT--GGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 (363)
Q Consensus 173 g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~~--GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~ 249 (363)
T Consensus 397 -~R~~ev~~ISr~LK~lAkel~vpVi~LsQLnR~~E~R~dkrP~lsDLReSG~IEQDADvV~~l~R~~~-~~~~~~~~~~ 474 (507)
T PRK05636 397 -SRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDS-QDKDDERAGE 474 (507)
T ss_pred -CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEECCCCC-CCCCCCCCCC
T ss_conf -68999999999999999997998899712684423479999772021264511542779999645343-5888877780
Q ss_pred EEEEEEECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 9987740577898515899986187423111
Q gi|255764460|r 250 TRVKVVKNKMASPFKQVEFDIMYGEGISFFG 280 (363)
Q Consensus 250 v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~ 280 (363)
T Consensus 475 ~elivaKnRnG~~---G~v~l~f~~~~~rF~ 502 (507)
T PRK05636 475 ADIILAKHRGGPI---DTVQVAHQLHYSRFV 502 (507)
T ss_pred EEEEEECCCCCCC---EEEEEEEECCCCCHH
T ss_conf 6999972688985---169999845867422