HHsearch alignment for GI: 255764460 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=97.45 E-value=0.0011 Score=42.85 Aligned_cols=89 Identities=15% Similarity=0.314 Sum_probs=58.0
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC--CHHHHHHH-CCC---HHHEE--EEECCCHHH
Q ss_conf 89726880799970687237899999987520089879999738855--66889981-988---33448--972584899
Q gi|255764460|r 61 IGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL--DSIYARKL-GVD---LKNLL--ISQPDTGEQ 132 (363)
Q Consensus 61 ~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~--~~~~a~~~-Gvd---~~~l~--~~~~~~~E~ 132 (363)
T Consensus 40 ~~~~~~~-~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~l~~~d~l~IDDi~~i~g~~~~e~~ 118 (234)
T PRK05642 40 DAGWTES-LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCIDDLDVIAGKADWEEA 118 (234)
T ss_pred CCCCCCC-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEECHHHHCCCHHHHHH
T ss_conf 6787788-389988999988999999999998079967997899987544999862422798989364554688599999
Q ss_pred HHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999974489768998
Q gi|255764460|r 133 ALEITDMLVRSGAVDIIVI 151 (363)
Q Consensus 133 ~~~i~~~li~~~~~~liVi 151 (363)
T Consensus 119 lF~l~N~~~~~~~-~llit 136 (234)
T PRK05642 119 LFHLFNRLRDSGR-RLLLA 136 (234)
T ss_pred HHHHHHHHHHCCC-EEEEE
T ss_conf 9999999998399-59995