HHsearch alignment for GI: 255764460 and conserved domain: PRK05688
>PRK05688 fliI flagellum-specific ATP synthase; Validated.
Probab=97.51 E-value=0.0003 Score=46.41 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=69.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH----CCC
Q ss_conf 65501477278999723897268807999706872378999999875200898799997388556-6889981----988
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL----GVD 118 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~----Gvd 118 (363)
T Consensus 148 i~epl~TGIraID~l~p---igrGQR~gIfggsGvGKS~Ll~~i~r~~-~adv~Vi~lIGERgrEv~efi~~~l~~~~~~ 223 (451)
T PRK05688 148 ISEPLDVGIRSINGLLT---VGRGQRLGLFAGTGVGKSVLLGMMTRFT-EADIIVVGLIGERGREVKEFIEHILGEEGLK 223 (451)
T ss_pred CCCCEECCCEEEECCCC---CCCCCEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEEEEEEEHHHHHHHHHHHHHCCCCC
T ss_conf 78620038468845467---2467564210488986899999998852-7986999961277599999999985156743
Q ss_pred HHHEEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 33448972584--------89999999999744897689981433322
Q gi|255764460|r 119 LKNLLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 119 ~~~l~~~~~~~--------~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 224 ~svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A 271 (451)
T PRK05688 224 RSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRYA 271 (451)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 058983388898799999998765589999867982599970557778