HHsearch alignment for GI: 255764460 and conserved domain: PRK06002
>PRK06002 fliI flagellum-specific ATP synthase; Validated.
Probab=97.74 E-value=0.00024 Score=47.05 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=69.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CHHHHHHH-CCCHHH
Q ss_conf 6550147727899972389726880799970687237899999987520089879999738855-66889981-988334
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHAL-DSIYARKL-GVDLKN 121 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~-~~~~a~~~-Gvd~~~ 121 (363)
T Consensus 145 i~epL~TGIkaID~l~pi---grGQR~gIfgg~GvGKTtLl-~~i~~~~~~d~vV~~lIGeRgrEv~ef~e~~l~~~l~~ 220 (450)
T PRK06002 145 VDTPLRTGVRVIDIFTPL---CAGQRIGIFAGSGVGKSTLL-AMLARADAFDTVVVALVGERGREVREFLEDTLADHLSK 220 (450)
T ss_pred CCCCCCCCHHHHHHHCCC---CCCCEEEECCCCCCCHHHHH-HHHHHHCCCCEEEEEEEEEEHHHHHHHHHHHHHCCCCE
T ss_conf 887663103133421460---14877774268999875999-99986258987999986474899999999876422000
Q ss_pred --EEEEECC--CHH------HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf --4897258--489------999999999744897689981433322
Q gi|255764460|r 122 --LLISQPD--TGE------QALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 122 --l~~~~~~--~~E------~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 221 svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~A 267 (450)
T PRK06002 221 AVAVVATGDESPMMRRLAPKTATAIAEYFRDRGENVLLIVDSVTRFA 267 (450)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 59997058898288765565544379999967996799982617888