HHsearch alignment for GI: 255764460 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=97.62 E-value=0.00021 Score=47.43 Aligned_cols=89 Identities=11% Similarity=0.222 Sum_probs=58.3
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHH-CCC---HHHEEEE--ECCCHHHH
Q ss_conf 972688079997068723789999998752008987999973885--566889981-988---3344897--25848999
Q gi|255764460|r 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKL-GVD---LKNLLIS--QPDTGEQA 133 (363)
Q Consensus 62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~~~a~~~-Gvd---~~~l~~~--~~~~~E~~ 133 (363)
T Consensus 41 ~~~~~-~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~l~~~dll~iDDi~~i~g~~~~ee~l 119 (235)
T PRK08084 41 RQEHS-GYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAI 119 (235)
T ss_pred HCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEECHHHHCCCHHHHHHH
T ss_conf 57898-76999899998889999999999970798579987798665179999876418989982745546997899999
Q ss_pred HHHHHHHHHCCCCCEEEE
Q ss_conf 999999974489768998
Q gi|255764460|r 134 LEITDMLVRSGAVDIIVI 151 (363)
Q Consensus 134 ~~i~~~li~~~~~~liVi 151 (363)
T Consensus 120 F~l~N~~~~~g~~~ll~t 137 (235)
T PRK08084 120 FDLYNRILESGKTRLLIT 137 (235)
T ss_pred HHHHHHHHHHCCCEEEEE
T ss_conf 999999998489669996