HHsearch alignment for GI: 255764460 and conserved domain: PRK08472
>PRK08472 fliI flagellum-specific ATP synthase; Validated.
Probab=97.62 E-value=0.0006 Score=44.53 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=70.1
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-HCCCHHH
Q ss_conf 65501477278999723897268807999706872378999999875200898799997388556-688998-1988334
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-LGVDLKN 121 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~Gvd~~~ 121 (363)
T Consensus 138 i~epl~TGIraID~l~p---igrGQR~gIf~g~GvGKt~Ll~~i~~~-~~~dv~V~~lIGeR~rEv~efie~~~~~~l~~ 213 (435)
T PRK08472 138 IDEVFSVGVKSIDGLLT---CGKGQKLGIFAGSGVGKSTLMGMIVKG-CLAPIKVVALIGERGREIPEFIEKNLGGDLSN 213 (435)
T ss_pred CCCCCCCCCEEEECCCC---CCCCCEEECCCCCCCCCCHHHHHHHHH-HCCCEEEEEEECEEHHHHHHHHHHHHHHCCCC
T ss_conf 88741158557743266---247766512358999833578888776-15998899761312278999999874113222
Q ss_pred EE--EEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 48--97258--------489999999999744897689981433322
Q gi|255764460|r 122 LL--ISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 122 l~--~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 214 tvvvvatsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A 260 (435)
T PRK08472 214 TVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFA 260 (435)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 59998468899899988888999999999867984899843627889