HHsearch alignment for GI: 255764460 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=99.77 E-value=1.2e-16 Score=124.82 Aligned_cols=203 Identities=25% Similarity=0.337 Sum_probs=137.8
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH--
Q ss_conf 5014772789997238972688079997068723789999998752008987999973885566--889981988334--
Q gi|255764460|r 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKN-- 121 (363)
Q Consensus 46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~-- 121 (363)
T Consensus 4 ~~~~~~~d~ld~~lg-gGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~ 82 (230)
T PRK08533 4 AKIELDGDELHKRLG-GGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKL 82 (230)
T ss_pred CCEECCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHH
T ss_conf 401057135788717-8988984899986899878999999999998789869999943899999999998699817997
Q ss_pred ----EEEEEC--CCHH--HHHHHHHHHH---HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----489725--8489--9999999997---4489768998143332202655434555302247888767767777642
Q gi|255764460|r 122 ----LLISQP--DTGE--QALEITDMLV---RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 (363)
Q Consensus 122 ----l~~~~~--~~~E--~~~~i~~~li---~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~ 190 (363)
T Consensus 83 ~~G~l~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~---------~~~~~~~~~lk~l~--- 150 (230)
T PRK08533 83 ISGKLLYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASE---------VQIRDLMAFFKRIS--- 150 (230)
T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCH---------HHHHHHHHHHHHHH---
T ss_conf 579679996134335404578999999732664379899990531885167778---------99999999999998---
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE--EEEEEECCCCC-CC-CEE
Q ss_conf 017818999863411456654665125655311111124897504553445772476799--98774057789-85-158
Q gi|255764460|r 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT--RVKVVKNKMAS-PF-KQV 266 (363)
Q Consensus 191 ~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v--~~kv~Knk~~~-P~-~~a 266 (363)
T Consensus 151 s~gktIilTv~p~~-----~--~e---~~l~~lrs~aDv~i~L~~~~--------vGg~~~r~i~V~K~~ga~~~~~~~I 212 (230)
T PRK08533 151 SLNKVIILTANPKE-----L--PE---SVLLILRTASTILIRLEVKV--------FGGDLKNSAKIVKYNMAKGSFQKII 212 (230)
T ss_pred HCCCEEEEEECCCC-----C--CH---HHHHHHHEEEEEEEEEEEEE--------CCCEEEEEEEEEEECCCCCCCCCEE
T ss_conf 58988999956331-----3--62---45442041048999987361--------0988999999998448987778647
Q ss_pred EEEEECCCCCCCC
Q ss_conf 9998618742311
Q gi|255764460|r 267 EFDIMYGEGISFF 279 (363)
Q Consensus 267 ~~~i~fg~GI~~~ 279 (363)
T Consensus 213 ~F~V~pg~GivVe 225 (230)
T PRK08533 213 PFRVEPGLGLAVE 225 (230)
T ss_pred EEEECCCCCEEEE
T ss_conf 8998068767999