HHsearch alignment for GI: 255764460 and conserved domain: PRK08972
>PRK08972 fliI flagellum-specific ATP synthase; Validated.
Probab=97.50 E-value=0.00054 Score=44.83 Aligned_cols=121 Identities=18% Similarity=0.300 Sum_probs=71.8
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH-CCC-HH
Q ss_conf 65501477278999723897268807999706872378999999875200898799997388556-6889981-988-33
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL-GVD-LK 120 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~-Gvd-~~ 120 (363)
T Consensus 140 i~epl~TGIkaID~l~pig---rGQRigIf~gsGvGKS~Ll~-~i~r~~~advvVi~lIGERgrEv~efie~~l~~~~~~ 215 (440)
T PRK08972 140 ITEPLDVGVRAINAMLTVG---KGQRMGLFAGSGVGKSVLLG-MMTRGTTADVIVVGLVGERGREVKEFIEEILGEEGRA 215 (440)
T ss_pred CCCCCCCCCEEEECCCCCC---CCCEEEECCCCCCCHHHHHH-HHHHCCCCCEEEEEEECEEHHHHHHHHHHHHCCCCCE
T ss_conf 7861015834563436712---46466631578975899998-8875147878999862313699999999985047744
Q ss_pred H--EEEEECCC--------HHHHHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHHHHH
Q ss_conf 4--48972584--------899999999997448976899814333220-265543455
Q gi|255764460|r 121 N--LLISQPDT--------GEQALEITDMLVRSGAVDIIVIDSVAALTP-RAEIEGDMG 168 (363)
Q Consensus 121 ~--l~~~~~~~--------~E~~~~i~~~li~~~~~~liViDSi~al~p-~~Eie~~~~ 168 (363)
T Consensus 216 rsvvV~atsd~~p~~R~~a~~~A~tiAEyFrd~G~~VLl~~DslTR~A~A~REisl~~g 274 (440)
T PRK08972 216 RSVVVAAPADTSPLMRLKGCETATRIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVG 274 (440)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 78999704888868899999999988999996799779996355677788878998748