HHsearch alignment for GI: 255764460 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.82 E-value=7e-19 Score=138.98 Aligned_cols=149 Identities=28% Similarity=0.411 Sum_probs=110.9
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCH--HHHHHHCCCHH
Q ss_conf 655014772789997238972688079997068723789999998752008-987999973885566--88998198833
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDS--IYARKLGVDLK 120 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~~--~~a~~~Gvd~~ 120 (363)
T Consensus 2 ~ieRi~TGI~GLD~iL~-GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~ 80 (501)
T PRK09302 2 GIEKLPTGIEGFDDITN-GGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQ 80 (501)
T ss_pred CCCCCCCCCCCHHHHHC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHH
T ss_conf 97421448711577854-89889977999838999999999999999988559978999857999999999998499868
Q ss_pred HE------EEE--ECCC----------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 44------897--2584----------89999999999744897689981433322026554345553022478887677
Q gi|255764460|r 121 NL------LIS--QPDT----------GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA 182 (363)
Q Consensus 121 ~l------~~~--~~~~----------~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~ 182 (363)
T Consensus 81 ~~~~~~~l~i~d~~~~~~~~~~~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~--~---------~~-~~R~~ 148 (501)
T PRK09302 81 KLIDEGKLFILDASPDPSEQEEAGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYD--N---------PA-VVRRE 148 (501)
T ss_pred HHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCC--C---------HH-HHHHH
T ss_conf 973268389996156743111334476899999999999971999999999789987635--8---------78-99999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 67777642017818999863411
Q gi|255764460|r 183 LRKLTSSISRSKCILVFINQMRM 205 (363)
Q Consensus 183 lrkl~~~~~k~~~~~i~iNQ~r~ 205 (363)
T Consensus 149 l~~L~~~l~~~g~T~llt~E~~~ 171 (501)
T PRK09302 149 LFRLFAWLKQKGVTAVMTGERGD 171 (501)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99999999877977999875666