HHsearch alignment for GI: 255764460 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.82  E-value=7e-19  Score=138.98  Aligned_cols=149  Identities=28%  Similarity=0.411  Sum_probs=110.9

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCH--HHHHHHCCCHH
Q ss_conf             655014772789997238972688079997068723789999998752008-987999973885566--88998198833
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALDS--IYARKLGVDLK  120 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~~--~~a~~~Gvd~~  120 (363)
T Consensus         2 ~ieRi~TGI~GLD~iL~-GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~   80 (501)
T PRK09302          2 GIEKLPTGIEGFDDITN-GGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQ   80 (501)
T ss_pred             CCCCCCCCCCCHHHHHC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHH
T ss_conf             97421448711577854-89889977999838999999999999999988559978999857999999999998499868


Q ss_pred             HE------EEE--ECCC----------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             44------897--2584----------89999999999744897689981433322026554345553022478887677
Q gi|255764460|r  121 NL------LIS--QPDT----------GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQA  182 (363)
Q Consensus       121 ~l------~~~--~~~~----------~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~  182 (363)
T Consensus        81 ~~~~~~~l~i~d~~~~~~~~~~~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~--~---------~~-~~R~~  148 (501)
T PRK09302         81 KLIDEGKLFILDASPDPSEQEEAGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYD--N---------PA-VVRRE  148 (501)
T ss_pred             HHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCC--C---------HH-HHHHH
T ss_conf             973268389996156743111334476899999999999971999999999789987635--8---------78-99999


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             67777642017818999863411
Q gi|255764460|r  183 LRKLTSSISRSKCILVFINQMRM  205 (363)
Q Consensus       183 lrkl~~~~~k~~~~~i~iNQ~r~  205 (363)
T Consensus       149 l~~L~~~l~~~g~T~llt~E~~~  171 (501)
T PRK09302        149 LFRLFAWLKQKGVTAVMTGERGD  171 (501)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCC
T ss_conf             99999999877977999875666