HHsearch alignment for GI: 255764460 and conserved domain: PRK09376

>PRK09376 rho transcription termination factor Rho; Provisional.
Probab=96.25  E-value=0.042  Score=32.84  Aligned_cols=88  Identities=24%  Similarity=0.299  Sum_probs=54.1

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCC----CEEEEEECCCCCCHHHHHHH--CCCHHHEEEEECC--------CHH
Q ss_conf             880799970687237899999987520089----87999973885566889981--9883344897258--------489
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTG----GTCAFVDAEHALDSIYARKL--GVDLKNLLISQPD--------TGE  131 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g----~~~~~iD~E~~~~~~~a~~~--Gvd~~~l~~~~~~--------~~E  131 (363)
T Consensus       168 kGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDER----PEEVTdm~r~v~-~eV~aStfD~~~~~H~~vae  242 (416)
T PRK09376        168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER----PEEVTDMQRSVK-GEVVASTFDEPAERHVQVAE  242 (416)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CHHHHHHHHHCC-EEEEEECCCCCHHHHHHHHH
T ss_conf             5850037569987547999999999985699719999990489----347778775046-18999779998789999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             999999999744897689981433322
Q gi|255764460|r  132 QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       132 ~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
T Consensus       243 ~~lerAkRlvE~G~DVvillDSiTRLa  269 (416)
T PRK09376        243 MVIEKAKRLVEHGKDVVILLDSITRLA  269 (416)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             999999999876997899973157888