HHsearch alignment for GI: 255764460 and conserved domain: PRK09519
>PRK09519 recA recombinase A; Reviewed.
Probab=99.81 E-value=1.1e-20 Score=150.41 Aligned_cols=323 Identities=30% Similarity=0.484 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCE---EEEEECCCCHHHHHH
Q ss_conf 769999999999986761--887379703665533465501477278999723897268807---999706872378999
Q gi|255764460|r 10 VDKSKALEAALSQIQRVY--GKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRI---VEIYGPESSGKTTLA 84 (363)
Q Consensus 10 ~~k~~~l~~~~~~i~k~~--g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri---~ei~G~~~sGKTtla 84 (363)
T Consensus 361 q~~q~~lg~lmG~g~~~~~~g~~~i~~~~~~~~~~d~~~~i~~-------~~g~~~~~~~~is~~v~~~p~e~~g~~~~~ 433 (790)
T PRK09519 361 ADHARLLGYLIGDGRDGWVGGKTPINFINVQRALIDDVTRIAA-------TLGCAAHPQGRISLAIAHRPGERNGVADLC 433 (790)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH-------CCCCCCCCCCEEEEEEECCCCCCCCCEECC
T ss_conf 7899999998527655787775420222443444314776520-------113345756404433202574235503212
Q ss_pred HHH-HHHHHHCCCEEE--EEECCCCCCHHHHHHHCCCHHHEEEEECCCH----------HH-HHHHHHHHHHCCC-----
Q ss_conf 999-875200898799--9973885566889981988334489725848----------99-9999999974489-----
Q gi|255764460|r 85 LHT-IAQSQKTGGTCA--FVDAEHALDSIYARKLGVDLKNLLISQPDTG----------EQ-ALEITDMLVRSGA----- 145 (363)
Q Consensus 85 l~~-~a~~qk~g~~~~--~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~----------E~-~~~i~~~li~~~~----- 145 (363)
T Consensus 434 ~q~~~~~~l~w~k~~~~~f~~~~~~~d~~~~~~~g~~~~d~~~~~~~~g~l~~~~~~~~e~~a~~i~~~~~~~~~g~~~~ 513 (790)
T PRK09519 434 QQAGIYGKLAWEKTIPNWFFEPDIAADIVGNLLFGLFESDGWVSREQTGALRVGYTTTSEQLAHQIHWLLLRFGVGSTVR 513 (790)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 00112455443202554334752002510221540101542001344540035744543789999999886327764233
Q ss_pred -------------------------CCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHC--CCCCE
Q ss_conf -------------------------7689981433322026554345553022478887677677--776420--17818
Q gi|255764460|r 146 -------------------------VDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK--LTSSIS--RSKCI 196 (363)
Q Consensus 146 -------------------------~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk--l~~~~~--k~~~~ 196 (363)
T Consensus 514 ~~~~~q~r~~~~~gr~v~~~~~~~ev~~~~~~~~~~l~~~~~~~G~~g~~~l~-~~~~a~~a~~~~~~a~yva~~m~~~l 592 (790)
T PRK09519 514 DYDPTQKRPSIVNGRRIQSKRQVFEVRISGMDNVTAFAESVPMWGPRGAALIQ-AIPEATQGRRRGSQATYLAAEMTDAV 592 (790)
T ss_pred CCCCHHCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 36611003466765121221000157777521433346134200642035776-62688898876303431233567779
Q ss_pred EEEEE-------CCCCCCCCCCCCCCC----CCC-------------------------CCCCCCCCCEE--EEEECCCC
Q ss_conf 99986-------341145665466512----565-------------------------53111111248--97504553
Q gi|255764460|r 197 LVFIN-------QMRMKIGVMFGSPET----TTG-------------------------GNALKFYSSVR--LDIRRVGS 238 (363)
Q Consensus 197 ~i~iN-------Q~r~~ig~m~g~p~~----~~G-------------------------G~al~~~aS~r--l~i~k~~~ 238 (363)
T Consensus 593 L~~~~~r~~~~~~~~~~i~~~~~~P~~~~~~~~~~~r~~~~r~~~~~~~~~~~~~~~~~~~~~~-y~~vr~~~~~rr~~t 671 (790)
T PRK09519 593 LNYLDERGVTAQEAAAMIGVASGDPRGGMKQVLGASRLRRDRVQALADALDDKFLHDMLAEELR-YSVIREVLPTRRART 671 (790)
T ss_pred HHHHCCCCCCCHHHCCCCCEECCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHCE-EEEEEECCCCCHHHH
T ss_conf 9985166665533315520324785547676404004455554322102221002124410101-246750466300221
Q ss_pred CCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHH
Q ss_conf 44577247679998774057789851589998618742311159999973286230274478889450303899999986
Q gi|255764460|r 239 IKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLR 318 (363)
Q Consensus 239 ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~ 318 (363)
T Consensus 672 ~~~~ve~~~~~~~~~vv~~k~spPFKqAeFdiLYG~GIsreG~LiDlGVe~g~vrKsGaWytYeGeqlGQGKeNArnfL~ 751 (790)
T PRK09519 672 FDLEVEELHTLVAEGVVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLV 751 (790)
T ss_pred HCCCHHHHCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCEEECCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 01101210331233334326689741100123422563545650431320040102572377425231563577888877
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 67999999999999981777545
Q gi|255764460|r 319 ENIEIAENIESLLRQNAGLVADS 341 (363)
Q Consensus 319 enp~l~~~i~~~ire~~~~~~~~ 341 (363)
T Consensus 752 ~N~d~AdEIEKkikekLgigavv 774 (790)
T PRK09519 752 ENADVADEIEKKIKEKLGIGAVV 774 (790)
T ss_pred HCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 49037799999999872875586