HHsearch alignment for GI: 255764460 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.18 E-value=0.0042 Score=39.16 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=55.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf 079997068723789999998752008987999973885566-------8899819883344897258489999999999
Q gi|255764460|r 68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQALEITDML 140 (363)
Q Consensus 68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~l 140 (363)
T Consensus 242 q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtD-TYRIGAVEQLKTYAeIMgVPV~V--V~dp~eL~~AL---~~l 315 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIA--VRDEAAMTRAL---TYF 315 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECC-CCHHHHHHHHHHHHHHHCCCEEE--ECCHHHHHHHH---HHH
T ss_conf 1799989999888999999999986169808999806-63476999999999984994399--68889999999---987
Q ss_pred HHCCCCCEEEEECCCC
Q ss_conf 7448976899814333
Q gi|255764460|r 141 VRSGAVDIIVIDSVAA 156 (363)
Q Consensus 141 i~~~~~~liViDSi~a 156 (363)
T Consensus 316 kdka~~DLILIDTAGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HHCCCCCEEEEECCCC
T ss_conf 6336888899929898