HHsearch alignment for GI: 255764460 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=96.45 E-value=0.026 Score=34.17 Aligned_cols=88 Identities=25% Similarity=0.286 Sum_probs=54.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCC----CEEEEEECCCCCCHHHHHHH--CCCHHHEEEEECC--------CHH
Q ss_conf 880799970687237899999987520089----87999973885566889981--9883344897258--------489
Q gi|255764460|r 66 KGRIVEIYGPESSGKTTLALHTIAQSQKTG----GTCAFVDAEHALDSIYARKL--GVDLKNLLISQPD--------TGE 131 (363)
Q Consensus 66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g----~~~~~iD~E~~~~~~~a~~~--Gvd~~~l~~~~~~--------~~E 131 (363)
T Consensus 131 kGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDER----PEEVTdm~r~v~-gEVvaSTfD~~~~~h~~vAe 205 (379)
T PRK12608 131 KGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDER----PEEVTDMKRSVK-GEVYASTFDRPYDRHIRVAE 205 (379)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHCC-EEEEEECCCCCHHHHHHHHH
T ss_conf 5740127458986578999999999985799848999981689----358888886237-07999779899899999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999999999744897689981433322
Q gi|255764460|r 132 QALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 132 ~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 206 l~lerAkrlvE~G~dVvillDSiTRla 232 (379)
T PRK12608 206 LVLERAKRLVEEGKDVVILLDSLTRLA 232 (379)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 999999999876996899965177889