HHsearch alignment for GI: 255764460 and conserved domain: PRK12608

>PRK12608 transcription termination factor Rho; Provisional.
Probab=96.45  E-value=0.026  Score=34.17  Aligned_cols=88  Identities=25%  Similarity=0.286  Sum_probs=54.4

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHCC----CEEEEEECCCCCCHHHHHHH--CCCHHHEEEEECC--------CHH
Q ss_conf             880799970687237899999987520089----87999973885566889981--9883344897258--------489
Q gi|255764460|r   66 KGRIVEIYGPESSGKTTLALHTIAQSQKTG----GTCAFVDAEHALDSIYARKL--GVDLKNLLISQPD--------TGE  131 (363)
Q Consensus        66 ~Gri~ei~G~~~sGKTtlal~~~a~~qk~g----~~~~~iD~E~~~~~~~a~~~--Gvd~~~l~~~~~~--------~~E  131 (363)
T Consensus       131 kGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDER----PEEVTdm~r~v~-gEVvaSTfD~~~~~h~~vAe  205 (379)
T PRK12608        131 KGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDER----PEEVTDMKRSVK-GEVYASTFDRPYDRHIRVAE  205 (379)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHCC-EEEEEECCCCCHHHHHHHHH
T ss_conf             5740127458986578999999999985799848999981689----358888886237-07999779899899999999


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             999999999744897689981433322
Q gi|255764460|r  132 QALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       132 ~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
T Consensus       206 l~lerAkrlvE~G~dVvillDSiTRla  232 (379)
T PRK12608        206 LVLERAKRLVEEGKDVVILLDSLTRLA  232 (379)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             999999999876996899965177889