HHsearch alignment for GI: 255764460 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.29  E-value=0.0014  Score=42.31  Aligned_cols=84  Identities=24%  Similarity=0.332  Sum_probs=58.2

Q ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHH
Q ss_conf             9726880799970687237899999987520-08987999973885566-------889981988334489725848999
Q gi|255764460|r   62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQA  133 (363)
Q Consensus        62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~  133 (363)
T Consensus       218 ~~~~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~D-TYRIgAvEQLktYa~Il~iPv~---v--v~~~~el  291 (432)
T PRK12724        218 TGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIAAIEQLKRYADTMGMPFY---P--VKDIKKF  291 (432)
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHHHHHHHHHCCCEE---E--EECHHHH
T ss_conf             57777629999899998889999999999999749927999526-6537799999999998599459---9--5189999


Q ss_pred             HHHHHHHHHCCCCCEEEEECCC
Q ss_conf             9999999744897689981433
Q gi|255764460|r  134 LEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       134 ~~i~~~li~~~~~~liViDSi~  155 (363)
T Consensus       292 ~~---al~~-~~~DlILIDTAG  309 (432)
T PRK12724        292 KE---TLAR-DGSELILIDTAG  309 (432)
T ss_pred             HH---HHHH-CCCCEEEEECCC
T ss_conf             99---9985-699999992999