HHsearch alignment for GI: 255764460 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=96.49  E-value=0.0043  Score=39.14  Aligned_cols=59  Identities=29%  Similarity=0.492  Sum_probs=36.5

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC----------------------------CCEE
Q ss_conf             014772789997238972688079997068723789999998752008----------------------------9879
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----------------------------GGTC   98 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~----------------------------g~~~   98 (363)
T Consensus        21 llg~~~-~L~~~i~~~~~~s--~-Il~GPPG~GKTTlA~-iiA~~~~~~f~~lnA~~~gv~dir~ii~~a~~~~~~~~ti   95 (417)
T PRK13342         21 LLGPGK-PLRRMIEAGRLSS--M-ILWGPPGTGKTTLAR-IIAGATDAEFEALSAVTSGVKDLREVIEEAKQSRLGRRTI   95 (417)
T ss_pred             HHCCCH-HHHHHHHCCCCCE--E-EEECCCCCCHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             608971-9999997699975--9-988969998999999-9999868988996141038899999999988631489659


Q ss_pred             EEEECCCCCCHH
Q ss_conf             999738855668
Q gi|255764460|r   99 AFVDAEHALDSI  110 (363)
Q Consensus        99 ~~iD~E~~~~~~  110 (363)
T Consensus        96 lfiDEIHRfnK~  107 (417)
T PRK13342         96 LFIDEIHRFNKA  107 (417)
T ss_pred             EEEECHHHCCHH
T ss_conf             999782005889