HHsearch alignment for GI: 255764460 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=96.49 E-value=0.0043 Score=39.14 Aligned_cols=59 Identities=29% Similarity=0.492 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC----------------------------CCEE
Q ss_conf 014772789997238972688079997068723789999998752008----------------------------9879
Q gi|255764460|r 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT----------------------------GGTC 98 (363)
Q Consensus 47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~----------------------------g~~~ 98 (363)
T Consensus 21 llg~~~-~L~~~i~~~~~~s--~-Il~GPPG~GKTTlA~-iiA~~~~~~f~~lnA~~~gv~dir~ii~~a~~~~~~~~ti 95 (417)
T PRK13342 21 LLGPGK-PLRRMIEAGRLSS--M-ILWGPPGTGKTTLAR-IIAGATDAEFEALSAVTSGVKDLREVIEEAKQSRLGRRTI 95 (417)
T ss_pred HHCCCH-HHHHHHHCCCCCE--E-EEECCCCCCHHHHHH-HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 608971-9999997699975--9-988969998999999-9999868988996141038899999999988631489659
Q ss_pred EEEECCCCCCHH
Q ss_conf 999738855668
Q gi|255764460|r 99 AFVDAEHALDSI 110 (363)
Q Consensus 99 ~~iD~E~~~~~~ 110 (363)
T Consensus 96 lfiDEIHRfnK~ 107 (417)
T PRK13342 96 LFIDEIHRFNKA 107 (417)
T ss_pred EEEECHHHCCHH
T ss_conf 999782005889