HHsearch alignment for GI: 255764460 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.39 E-value=0.0037 Score=39.53 Aligned_cols=44 Identities=39% Similarity=0.580 Sum_probs=30.9
Q ss_pred EEEEECCCCHHHHHHHHHHH-HHHHC-----------------------CCEEEEEECCCCCCHHHHHH
Q ss_conf 99970687237899999987-52008-----------------------98799997388556688998
Q gi|255764460|r 70 VEIYGPESSGKTTLALHTIA-QSQKT-----------------------GGTCAFVDAEHALDSIYARK 114 (363)
Q Consensus 70 ~ei~G~~~sGKTtlal~~~a-~~qk~-----------------------g~~~~~iD~E~~~~~~~a~~ 114 (363)
T Consensus 33 ~LL~GPPGLGKTTLA-~IiA~Emg~~l~iTsGP~L~kPgDlaaiLt~L~~gDVLFIDEIHRL~p~~EE~ 100 (305)
T TIGR00635 33 LLLYGPPGLGKTTLA-HIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAIEEL 100 (305)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCHHHHHH
T ss_conf 663175687467899-99999838932674067554757899999705689631012565048334531