HHsearch alignment for GI: 255764460 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.34 E-value=0.0028 Score=40.30 Aligned_cols=121 Identities=31% Similarity=0.469 Sum_probs=72.4
Q ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEE
Q ss_conf 14772789997238972688079997068723789999998752008987999973885566889981-98833448972
Q gi|255764460|r 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQ 126 (363)
Q Consensus 48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~ 126 (363)
T Consensus 224 lP~~hPe~f~~lG-iePPkG--~ll~GPPGtGktlla-ka~ane~----~a~f~~inG---Peimsky~G---------- 282 (980)
T TIGR01243 224 LPLKHPELFEKLG-IEPPKG--VLLYGPPGTGKTLLA-KAVANEA----GAYFIAING---PEIMSKYYG---------- 282 (980)
T ss_pred CCCCCHHHHHHCC-CCCCCC--EEEECCCCCCHHHHH-HHHHHHC----CCEEEEECC---CHHHHHHCC----------
T ss_conf 3575647898618-899873--587558986178999-9987530----551788506---034433136----------
Q ss_pred CCCHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 58489999-9999997448976899814333220265-5434555302247888767767777642017818999
Q gi|255764460|r 127 PDTGEQAL-EITDMLVRSGAVDIIVIDSVAALTPRAE-IEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF 199 (363)
Q Consensus 127 ~~~~E~~~-~i~~~li~~~~~~liViDSi~al~p~~E-ie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~ 199 (363)
T Consensus 283 -e-~e~~lr~if~e-aeenaP~iifideidaiaPkr~e~~Ge-------ve~r~v~qlltlmdGlk~rG~v~viG 347 (980)
T TIGR01243 283 -E-SEERLREIFKE-AEENAPSIIFIDEIDAIAPKREEVTGE-------VEKRVVAQLLTLMDGLKGRGKVIVIG 347 (980)
T ss_pred -C-CHHHHHHHHHH-HHHCCCCEEEEECHHHCCCCCCCHHHH-------HHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf -3-07899999986-530587078741211007641000016-------88999999999974002487289981