HHsearch alignment for GI: 255764460 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=97.55 E-value=0.0011 Score=42.89 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=76.2
Q ss_pred CCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHH-HH
Q ss_conf 55334655-01477278999723897268807999706872378999999875200898799997388556-68899-81
Q gi|255764460|r 39 GSIFEGIE-VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYAR-KL 115 (363)
Q Consensus 39 ~~~~~~~~-~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~-~~ 115 (363)
T Consensus 127 P~~R~~I~~PL~tGvRaiDGlLTcG---~GQRiGIFA~aG~GKSTLL~~i~~-g~~ADv~V~ALIGERGREVREFiE~~l 202 (430)
T TIGR02546 127 PMSRQPIDQPLPTGVRAIDGLLTCG---EGQRIGIFAGAGVGKSTLLGMIAR-GASADVNVIALIGERGREVREFIEHLL 202 (430)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHCC
T ss_conf 8767533465101466754344036---653057870888616689999861-898878998602787604788875207
Q ss_pred CCC-HHH-EEEEEC-C--CHHH------HHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 988-334-489725-8--4899------99999999744897689981433
Q gi|255764460|r 116 GVD-LKN-LLISQP-D--TGEQ------ALEITDMLVRSGAVDIIVIDSVA 155 (363)
Q Consensus 116 Gvd-~~~-l~~~~~-~--~~E~------~~~i~~~li~~~~~~liViDSi~ 155 (363)
T Consensus 203 g~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIAEYFRDQGk~VlLmmDSlT 253 (430)
T TIGR02546 203 GEEGRKRSVLVVSTSDRSSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLT 253 (430)
T ss_pred CHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHH
T ss_conf 830524248996079866799999987887999999973990798840277