HHsearch alignment for GI: 255764460 and conserved domain: TIGR02546

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=97.55  E-value=0.0011  Score=42.89  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=76.2

Q ss_pred             CCCCCCCC-CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHH-HH
Q ss_conf             55334655-01477278999723897268807999706872378999999875200898799997388556-68899-81
Q gi|255764460|r   39 GSIFEGIE-VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYAR-KL  115 (363)
Q Consensus        39 ~~~~~~~~-~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~-~~  115 (363)
T Consensus       127 P~~R~~I~~PL~tGvRaiDGlLTcG---~GQRiGIFA~aG~GKSTLL~~i~~-g~~ADv~V~ALIGERGREVREFiE~~l  202 (430)
T TIGR02546       127 PMSRQPIDQPLPTGVRAIDGLLTCG---EGQRIGIFAGAGVGKSTLLGMIAR-GASADVNVIALIGERGREVREFIEHLL  202 (430)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHC-CCCCCEEEEEECCCCCHHHHHHHHHCC
T ss_conf             8767533465101466754344036---653057870888616689999861-898878998602787604788875207


Q ss_pred             CCC-HHH-EEEEEC-C--CHHH------HHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             988-334-489725-8--4899------99999999744897689981433
Q gi|255764460|r  116 GVD-LKN-LLISQP-D--TGEQ------ALEITDMLVRSGAVDIIVIDSVA  155 (363)
Q Consensus       116 Gvd-~~~-l~~~~~-~--~~E~------~~~i~~~li~~~~~~liViDSi~  155 (363)
T Consensus       203 g~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIAEYFRDQGk~VlLmmDSlT  253 (430)
T TIGR02546       203 GEEGRKRSVLVVSTSDRSSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLT  253 (430)
T ss_pred             CHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHH
T ss_conf             830524248996079866799999987887999999973990798840277