HHsearch alignment for GI: 255764460 and conserved domain: TIGR03324
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=98.05 E-value=5.5e-05 Score=51.10 Aligned_cols=111 Identities=23% Similarity=0.373 Sum_probs=73.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHH---C-CC
Q ss_conf 5501477278999723897268807999706872378999999875200898799997388556--6889981---9-88
Q gi|255764460|r 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKL---G-VD 118 (363)
Q Consensus 45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~---G-vd 118 (363)
T Consensus 143 ~epL~TGIkaID~liPIG---rGQRelIigdrgtGKTtla~dtIinqk~~~vicVyvaIGqr~seV~~~v~~l~~~gal~ 219 (497)
T TIGR03324 143 TVPLQTGLKVIDALIPIG---RGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMD 219 (497)
T ss_pred CCCCCCCHHHHHCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCC
T ss_conf 871002414554246556---77467764588888008899999704566718999973250787999999987487523
Q ss_pred HHHEEEEECC--CHHH------HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 3344897258--4899------99999999744897689981433322
Q gi|255764460|r 119 LKNLLISQPD--TGEQ------ALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 119 ~~~l~~~~~~--~~E~------~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 220 ~TvVV~Ata~dpa~lr~~Apyaa~aiAEyFrd~G~dVLlv~DdLTr~A 267 (497)
T TIGR03324 220 YTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHA 267 (497)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHH
T ss_conf 417999568899899988789999999999968974899997806999