HHsearch alignment for GI: 255764460 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.31 E-value=0.0065 Score=37.99 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=46.2
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECC--CCCCHH-HHHHHCCC-----------HHHEEEEE
Q ss_conf 97268807999706872378999999875-20089879999738--855668-89981988-----------33448972
Q gi|255764460|r 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAE--HALDSI-YARKLGVD-----------LKNLLISQ 126 (363)
Q Consensus 62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~~~~iD~E--~~~~~~-~a~~~Gvd-----------~~~l~~~~ 126 (363)
T Consensus 486 l~i~~Ge~vaIvG~sGsGKSTL~-kll~Gl~~p~~G~-i~idg~~~~~~~~~~~r~~i~~v~Q~~~lf~gTi~eNi~~~~ 563 (694)
T TIGR03375 486 LTIRPGEKVAIIGRIGSGKSTLL-KLLLGLYQPTEGS-VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA 563 (694)
T ss_pred HEECCCCEEEEEECCCCCHHHHH-HHHCCCCCCCCCE-EEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCC
T ss_conf 18879978999805898788999-9855675899887-998985425499999973021357677110746999984169
Q ss_pred CC-CHHHHHHHHH
Q ss_conf 58-4899999999
Q gi|255764460|r 127 PD-TGEQALEITD 138 (363)
Q Consensus 127 ~~-~~E~~~~i~~ 138 (363)
T Consensus 564 ~~~~~~~i~~a~~ 576 (694)
T TIGR03375 564 PYADDEEILRAAE 576 (694)
T ss_pred CCCCHHHHHHHHH
T ss_conf 9999999999999