>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

Probab=99.64 E-value=4.9e-13 Score=101.99 Aligned_cols=211 Identities=22% Similarity=0.294 Sum_probs=134.5 Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH-HHHCCCEEEEEECCCCCCHHHHH-----HHCCC Q ss_conf 5501477278999723897268807999706872378999999875-20089879999738855668899-----81988 Q gi|255764460|r 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ-SQKTGGTCAFVDAEHALDSIYAR-----KLGVD 118 (363) Q Consensus 45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~-~qk~g~~~~~iD~E~~~~~~~a~-----~~Gvd 118 (363) T Consensus 174 ~~Gi~TG~~~LD~~~--~Gl~~g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs~e-ql~~R~la~~s~i~ 250 (421) T TIGR03600 174 LTGLSTGLPKLDRLT--NGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAE-QLGERLLASKSGIN 250 (421) T ss_pred CCCCCCCCHHHHHHH--CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHHCCCC T ss_conf 677878807899983--699988689998546787459999999999986698389992579999-99999999854897 Q ss_pred HHHE-------------------------EEEE-C-CCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 3344-------------------------8972-5-84899999999997448-97689981433322026554345553 Q gi|255764460|r 119 LKNL-------------------------LISQ-P-DTGEQALEITDMLVRSG-AVDIIVIDSVAALTPRAEIEGDMGES 170 (363) Q Consensus 119 ~~~l-------------------------~~~~-~-~~~E~~~~i~~~li~~~-~~~liViDSi~al~p~~Eie~~~~d~ 170 (363) T Consensus 251 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livIDYLqLi~~~~---~~--~- 324 (421) T TIGR03600 251 TGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR---GR--D- 324 (421) T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCC---CC--C- T ss_conf 76665289998999999999998616878996699887678999999999862898699975786537888---88--8- Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCCCC--CCCCCCCCCCCEEEEEECCCCCCCCCEEEE Q ss_conf 022478887677677776420178189998634114566546-65125--655311111124897504553445772476 Q gi|255764460|r 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFG-SPETT--TGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 (363) Q Consensus 171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g-~p~~~--~GG~al~~~aS~rl~i~k~~~ik~~~~~iG 247 (363) T Consensus 325 ---r~-~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~R~dkrP~lsDLReSG~IEqdADvV~fl~R~~~y~~~~~~~~ 400 (421) T TIGR03600 325 ---RN-EELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAG 400 (421) T ss_pred ---HH-HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC T ss_conf ---89-99999999999999997997899705786523368888654344433574204748999613333478888888 Q ss_pred EEEEEEEEECCCCCCCCEEEEEEEC Q ss_conf 7999877405778985158999861 Q gi|255764460|r 248 NQTRVKVVKNKMASPFKQVEFDIMY 272 (363) Q Consensus 248 ~~v~~kv~Knk~~~P~~~a~~~i~f 272 (363) T Consensus 401 -~~e~ivaKnRnG~~G---~v~l~f 421 (421) T TIGR03600 401 -VAELILAKNRHGPTG---TVELLF 421 (421) T ss_pred -EEEEEEEECCCCCCC---EEEEEC T ss_conf -389999814789984---387539

HHsearch alignment for GI: 255764460 and conserved domain: TIGR03600