HHsearch alignment for GI: 255764460 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00 E-value=0 Score=768.71 Aligned_cols=324 Identities=69% Similarity=1.088 Sum_probs=318.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 69999999999986761887379703665533465501477278999723897268807999706872378999999875
Q gi|255764460|r 11 DKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQ 90 (363)
Q Consensus 11 ~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~ 90 (363)
T Consensus 1 ~~~~~l~~~~~~i~k~fg~~~~~~~~~~~--~~~~~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~ 78 (325)
T cd00983 1 EKQKALELALKQIEKKFGKGSIMKLGDDA--VQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE 78 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCCCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 95789999999999871986458988777--8865346268199999975899668808999889877799999999999
Q ss_pred HHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 20089879999738855668899819883344897258489999999999744897689981433322026554345553
Q gi|255764460|r 91 SQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGES 170 (363)
Q Consensus 91 ~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~ 170 (363)
T Consensus 79 aQk~gg~~~~iDaE~a~d~~~a~~lGVD~~~l~~~qp~~~Eq~l~i~~~li~s~~~dliViDSvaal~p~~E~e~~~~d~ 158 (325)
T cd00983 79 AQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDS 158 (325)
T ss_pred HHHCCCEEEEEEHHHCCCHHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCC
T ss_conf 87359839999625425989999809984675896663899999999997515887679981511236578876011321
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 02247888767767777642017818999863411456654665125655311111124897504553445772476799
Q gi|255764460|r 171 LPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQT 250 (363)
Q Consensus 171 ~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v 250 (363)
T Consensus 159 ~vg~~ArlmskalRklt~~l~k~~~~lIfiNQ~R~kiG~mfg~pe~t~GG~Alkf~aSvrl~l~k~~~ik~~~~~iG~~i 238 (325)
T cd00983 159 HVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRT 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCCCCCCCCCEEEEE
T ss_conf 14389999999999999875337807999554322157756898537997505512113899976131257885077699
Q ss_pred EEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98774057789851589998618742311159999973286230274478889450303899999986679999999999
Q gi|255764460|r 251 RVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENIESL 330 (363)
Q Consensus 251 ~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~enp~l~~~i~~~ 330 (363)
T Consensus 239 kvkv~KnK~a~P~r~a~~~i~yg~GId~~~elldla~~~giI~k~Gawy~~~~e~~~qG~~~~~~~l~e~~e~~~~l~~~ 318 (325)
T cd00983 239 KVKVVKNKVAPPFKTAEFDILFGEGISREGEIIDLAVELGIIKKSGSWYSYGDEKLGQGRENAKEYLKENPELADEIEKK 318 (325)
T ss_pred EEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCEEECCEEEHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 99999788689986799994678763425329999987797685455299899873766999999998799999999999
Q ss_pred HHHHHC
Q ss_conf 999817
Q gi|255764460|r 331 LRQNAG 336 (363)
Q Consensus 331 ire~~~ 336 (363)
T Consensus 319 i~~~~~ 324 (325)
T cd00983 319 VREKLG 324 (325)
T ss_pred HHHHCC
T ss_conf 999709