HHsearch alignment for GI: 255764460 and conserved domain: cd01121

>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.89  E-value=2.4e-21  Score=154.55  Aligned_cols=211  Identities=25%  Similarity=0.370  Sum_probs=160.5

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHHCCCHH
Q ss_conf             465501477278999723897268807999706872378999999875200898799997388556--688998198833
Q gi|255764460|r   43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKLGVDLK  120 (363)
Q Consensus        43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~Gvd~~  120 (363)
T Consensus        59 ~~~~R~~Tgi~ElDRVLG-GGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~  137 (372)
T cd01121          59 EEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTE  137 (372)
T ss_pred             CCCCCCCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf             655544478366654005-7730671799825998868899999999998639938998245678999989998587887


Q ss_pred             HEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             44897258489999999999744897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r  121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI  200 (363)
Q Consensus       121 ~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i  200 (363)
T Consensus       138 ~l~l~set~le~Il~~i~~----~kP~~lIIDSIQT~~~-~~~~s~pGs--v-sQVReca~---~L~~~AK~~~i~~~lV  206 (372)
T cd01121         138 NLYLLAETNLEDILASIEE----LKPDLVIIDSIQTVYS-SELTSAPGS--V-SQVRECTA---ELMRFAKERNIPIFIV  206 (372)
T ss_pred             CCEEEECCCHHHHHHHHHH----HCCCEEEEECHHHCCC-CCCCCCCCC--H-HHHHHHHH---HHHHHHHHCCCEEEEE
T ss_conf             7278843569999999997----1998899956220203-776779987--8-99999999---9999998619739999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCCCCEEEEEEECCCC---C
Q ss_conf             634114566546651256553111111248975045534457724767999-877405778985158999861874---2
Q gi|255764460|r  201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASPFKQVEFDIMYGEG---I  276 (363)
Q Consensus       201 NQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P~~~a~~~i~fg~G---I  276 (363)
T Consensus       207 GHVTK~-G~i-------AGPkvLEHmVDtVl~fEgd~---------~~~~R~LR~~KNRFG~t~EiGvFeM~-~~GL~~V  268 (372)
T cd01121         207 GHVTKE-GSI-------AGPKVLEHMVDTVLYFEGDR---------HSEYRILRSVKNRFGSTNELGVFEMR-ENGLREV  268 (372)
T ss_pred             EEECCC-CCC-------CCCHHHEEEEEEEEEECCCC---------CCCEEEEEEECCCCCCCCEEEEEEEC-CCCCEEC
T ss_conf             876268-863-------77403100213688751577---------65503567411567775405888731-6870563


Q ss_pred             CCCCHHH
Q ss_conf             3111599
Q gi|255764460|r  277 SFFGELI  283 (363)
Q Consensus       277 ~~~~~ll  283 (363)
T Consensus       269 ~nPS~~F  275 (372)
T cd01121         269 SNPSELF  275 (372)
T ss_pred             CCHHHHH
T ss_conf             6856988