HHsearch alignment for GI: 255764460 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.89 E-value=2.4e-21 Score=154.55 Aligned_cols=211 Identities=25% Similarity=0.370 Sum_probs=160.5
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHHHHHHCCCHH
Q ss_conf 465501477278999723897268807999706872378999999875200898799997388556--688998198833
Q gi|255764460|r 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIYARKLGVDLK 120 (363)
Q Consensus 43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~a~~~Gvd~~ 120 (363)
T Consensus 59 ~~~~R~~Tgi~ElDRVLG-GGiVpGSvvLlgGePGIGKSTLLLQia~~la~~~~~vLYvSGEES~~QIk~RA~RLg~~~~ 137 (372)
T cd01121 59 EEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTE 137 (372)
T ss_pred CCCCCCCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf 655544478366654005-7730671799825998868899999999998639938998245678999989998587887
Q ss_pred HEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 44897258489999999999744897689981433322026554345553022478887677677776420178189998
Q gi|255764460|r 121 NLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVFI 200 (363)
Q Consensus 121 ~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~i 200 (363)
T Consensus 138 ~l~l~set~le~Il~~i~~----~kP~~lIIDSIQT~~~-~~~~s~pGs--v-sQVReca~---~L~~~AK~~~i~~~lV 206 (372)
T cd01121 138 NLYLLAETNLEDILASIEE----LKPDLVIIDSIQTVYS-SELTSAPGS--V-SQVRECTA---ELMRFAKERNIPIFIV 206 (372)
T ss_pred CCEEEECCCHHHHHHHHHH----HCCCEEEEECHHHCCC-CCCCCCCCC--H-HHHHHHHH---HHHHHHHHCCCEEEEE
T ss_conf 7278843569999999997----1998899956220203-776779987--8-99999999---9999998619739999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCCCCEEEEEEECCCC---C
Q ss_conf 634114566546651256553111111248975045534457724767999-877405778985158999861874---2
Q gi|255764460|r 201 NQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASPFKQVEFDIMYGEG---I 276 (363)
Q Consensus 201 NQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P~~~a~~~i~fg~G---I 276 (363)
T Consensus 207 GHVTK~-G~i-------AGPkvLEHmVDtVl~fEgd~---------~~~~R~LR~~KNRFG~t~EiGvFeM~-~~GL~~V 268 (372)
T cd01121 207 GHVTKE-GSI-------AGPKVLEHMVDTVLYFEGDR---------HSEYRILRSVKNRFGSTNELGVFEMR-ENGLREV 268 (372)
T ss_pred EEECCC-CCC-------CCCHHHEEEEEEEEEECCCC---------CCCEEEEEEECCCCCCCCEEEEEEEC-CCCCEEC
T ss_conf 876268-863-------77403100213688751577---------65503567411567775405888731-6870563
Q ss_pred CCCCHHH
Q ss_conf 3111599
Q gi|255764460|r 277 SFFGELI 283 (363)
Q Consensus 277 ~~~~~ll 283 (363)
T Consensus 269 ~nPS~~F 275 (372)
T cd01121 269 SNPSELF 275 (372)
T ss_pred CCHHHHH
T ss_conf 6856988