HHsearch alignment for GI: 255764460 and conserved domain: cd01122

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.70  E-value=1.9e-14  Score=110.91  Aligned_cols=203  Identities=17%  Similarity=0.209  Sum_probs=139.0

Q ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHH---H-HHHCCCHH--
Q ss_conf             147727899972389726880799970687237899999987520-0898799997388556688---9-98198833--
Q gi|255764460|r   48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIY---A-RKLGVDLK--  120 (363)
Q Consensus        48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~---a-~~~Gvd~~--  120 (363)
T Consensus        13 ~~~pf~~LD~~~--~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g~~~~~~   90 (271)
T cd01122          13 VWWPFPVLNKLT--KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLP   90 (271)
T ss_pred             CCCCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHC
T ss_conf             658816688873--799998089999689986999999999999997699089997049999999999999829971103


Q ss_pred             ----------------------HEEEEEC---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf             ----------------------4489725---848999999999974489768998143332202655434555302247
Q gi|255764460|r  121 ----------------------NLLISQP---DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ  175 (363)
Q Consensus       121 ----------------------~l~~~~~---~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~  175 (363)
T Consensus        91 ~~~~~~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~~~~~--------~~d~  162 (271)
T cd01122          91 DTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERA--------SGDE  162 (271)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCC--------CCCH
T ss_conf             44677809999999999707998088789999889999999999998289988998317850367867--------7318


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC----CCCCC--CCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf             88876776777764201781899986341145665----46651--2565531111112489750455344577247679
Q gi|255764460|r  176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPE--TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ  249 (363)
Q Consensus       176 ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m----~g~p~--~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~  249 (363)
T Consensus       163 ~~~i~~i~~~Lk~lAke~~v~Vi~lsQlnR~~~~~~~~~~~~~~lsDlrgSg~ieq~AD~vi~l~R~~~-~~~~--~~~~  239 (271)
T cd01122         163 RKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQ-AELD--ERNT  239 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCEEEEEEECCC-CCCC--CCCE
T ss_conf             999999999999999997997799952676535556566877566661243012532879999975576-6667--8982


Q ss_pred             EEEEEEECCC-CCCC
Q ss_conf             9987740577-8985
Q gi|255764460|r  250 TRVKVVKNKM-ASPF  263 (363)
Q Consensus       250 v~~kv~Knk~-~~P~  263 (363)
T Consensus       240 ~~l~v~KnR~~G~tG  254 (271)
T cd01122         240 TYLRILKNRFTGGTG  254 (271)
T ss_pred             EEEEEEECCCCCCCC
T ss_conf             899999368989998