HHsearch alignment for GI: 255764460 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.70 E-value=1.9e-14 Score=110.91 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=139.0
Q ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHH---H-HHHCCCHH--
Q ss_conf 147727899972389726880799970687237899999987520-0898799997388556688---9-98198833--
Q gi|255764460|r 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGGTCAFVDAEHALDSIY---A-RKLGVDLK-- 120 (363)
Q Consensus 48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~~~~~iD~E~~~~~~~---a-~~~Gvd~~-- 120 (363)
T Consensus 13 ~~~pf~~LD~~~--~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~~~~Rlls~~~g~~~~~~ 90 (271)
T cd01122 13 VWWPFPVLNKLT--KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLP 90 (271)
T ss_pred CCCCCHHHHHHH--CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHC
T ss_conf 658816688873--799998089999689986999999999999997699089997049999999999999829971103
Q ss_pred ----------------------HEEEEEC---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf ----------------------4489725---848999999999974489768998143332202655434555302247
Q gi|255764460|r 121 ----------------------NLLISQP---DTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQ 175 (363)
Q Consensus 121 ----------------------~l~~~~~---~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ 175 (363)
T Consensus 91 ~~~~~~~~e~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~~~~~--------~~d~ 162 (271)
T cd01122 91 DTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERA--------SGDE 162 (271)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCC--------CCCH
T ss_conf 44677809999999999707998088789999889999999999998289988998317850367867--------7318
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC----CCCCC--CCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
Q ss_conf 88876776777764201781899986341145665----46651--2565531111112489750455344577247679
Q gi|255764460|r 176 ARLMSQALRKLTSSISRSKCILVFINQMRMKIGVM----FGSPE--TTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQ 249 (363)
Q Consensus 176 ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m----~g~p~--~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~ 249 (363)
T Consensus 163 ~~~i~~i~~~Lk~lAke~~v~Vi~lsQlnR~~~~~~~~~~~~~~lsDlrgSg~ieq~AD~vi~l~R~~~-~~~~--~~~~ 239 (271)
T cd01122 163 RKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQ-AELD--ERNT 239 (271)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHCCEEEEEEECCC-CCCC--CCCE
T ss_conf 999999999999999997997799952676535556566877566661243012532879999975576-6667--8982
Q ss_pred EEEEEEECCC-CCCC
Q ss_conf 9987740577-8985
Q gi|255764460|r 250 TRVKVVKNKM-ASPF 263 (363)
Q Consensus 250 v~~kv~Knk~-~~P~ 263 (363)
T Consensus 240 ~~l~v~KnR~~G~tG 254 (271)
T cd01122 240 TYLRILKNRFTGGTG 254 (271)
T ss_pred EEEEEEECCCCCCCC
T ss_conf 899999368989998