HHsearch alignment for GI: 255764460 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00 E-value=4.7e-41 Score=279.22 Aligned_cols=213 Identities=28% Similarity=0.453 Sum_probs=176.3
Q ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH------CCCEEEEEECCCCCCHHHH----HHHCC
Q ss_conf 1477278999723897268807999706872378999999875200------8987999973885566889----98198
Q gi|255764460|r 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQK------TGGTCAFVDAEHALDSIYA----RKLGV 117 (363)
Q Consensus 48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk------~g~~~~~iD~E~~~~~~~a----~~~Gv 117 (363)
T Consensus 1 isTG~~~lD~~L~-GGi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~Rl~qia~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9888578996507-996478799999999984999999999998424753678962999953677588999999997134
Q ss_pred CH----HHEEEEECCCHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 83----344897258489999999999----7448976899814333220265543455530224788876776777764
Q gi|255764460|r 118 DL----KNLLISQPDTGEQALEITDML----VRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSS 189 (363)
Q Consensus 118 d~----~~l~~~~~~~~E~~~~i~~~l----i~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~ 189 (363)
T Consensus 80 ~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia~l~-r~e~~~~---~~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALF-RAEFDGR---GELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred CHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHH-HHHHCCC---CCHHHHHHHHHHHHHHHHHH
T ss_conf 7245422547963799999999999999987303772399996104555-6664488---64478999999999999999
Q ss_pred HCCCCCEEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEE
Q ss_conf 201781899986341145665---46651256553111111248975045534457724767999877405778985158
Q gi|255764460|r 190 ISRSKCILVFINQMRMKIGVM---FGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQV 266 (363)
Q Consensus 190 ~~k~~~~~i~iNQ~r~~ig~m---~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a 266 (363)
T Consensus 156 A~~~~~aVvvtNqvt~~~~~~~~~~~~~~~palG~~w~h~v~~rl~l~~~~---------~~~R~l~v~ks~~~p~~-~~ 225 (235)
T cd01123 156 ADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR---------GEERIAKIVDSPHLPEG-EA 225 (235)
T ss_pred HHHCCCEEEEECEEEEECCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEECC---------CCEEEEEEEECCCCCCE-EE
T ss_conf 998097999968065506764245788643450266785385999999479---------97189999868999981-79
Q ss_pred EEEEECCCCC
Q ss_conf 9998618742
Q gi|255764460|r 267 EFDIMYGEGI 276 (363)
Q Consensus 267 ~~~i~fg~GI 276 (363)
T Consensus 226 ~f~It-~~Gi 234 (235)
T cd01123 226 VFAIT-EEGI 234 (235)
T ss_pred EEEEE-CCCC
T ss_conf 99982-8857