HHsearch alignment for GI: 255764460 and conserved domain: cd01128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.43 E-value=0.0006 Score=44.55 Aligned_cols=102 Identities=25% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEE-ECCCC-CCHHHHHHHCCCHHHEEEEE
Q ss_conf 72789997238972688079997068723789999998752008--9879999-73885-56688998198833448972
Q gi|255764460|r 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT--GGTCAFV-DAEHA-LDSIYARKLGVDLKNLLISQ 126 (363)
Q Consensus 51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~--g~~~~~i-D~E~~-~~~~~a~~~Gvd~~~l~~~~ 126 (363)
T Consensus 3 ~~r~ID~l~p---igkGQR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~~~~~~---~~vv~st 76 (249)
T cd01128 3 STRVVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK---GEVIAST 76 (249)
T ss_pred CCEEEEEECC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHC---EEEEEEC
T ss_conf 4101543246---167867788789998899999999999998589849999997165799999999716---1699956
Q ss_pred CC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 58--------489999999999744897689981433322
Q gi|255764460|r 127 PD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 127 ~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 77 ~d~~p~~r~~~a~~a~~iAEyfr~~G~dVLl~~DslTR~A 116 (249)
T cd01128 77 FDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf 9999899999999999999999987997799951488999