HHsearch alignment for GI: 255764460 and conserved domain: cd01133
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.00 E-value=4.1e-05 Score=51.90 Aligned_cols=111 Identities=21% Similarity=0.364 Sum_probs=70.8
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCC--HHHHHHH-CCC-H
Q ss_conf 55014772789997238972688079997068723789999998752008-98799997388556--6889981-988-3
Q gi|255764460|r 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALD--SIYARKL-GVD-L 119 (363)
Q Consensus 45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~--~~~a~~~-Gvd-~ 119 (363)
T Consensus 50 ~e~l~TGIr~ID~l~p---igkGQR~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~~~~~l 126 (274)
T cd01133 50 TEILETGIKVIDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVL 126 (274)
T ss_pred CCCCCCCCEEEECCCC---CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCC
T ss_conf 8731158666644466---1478577875799998236899999999850898799998425548899999972035665
Q ss_pred HH--EEEEECC--------CHHHHHHHHHHHHHC-CCCCEEEEECCCCCC
Q ss_conf 34--4897258--------489999999999744-897689981433322
Q gi|255764460|r 120 KN--LLISQPD--------TGEQALEITDMLVRS-GAVDIIVIDSVAALT 158 (363)
Q Consensus 120 ~~--l~~~~~~--------~~E~~~~i~~~li~~-~~~~liViDSi~al~ 158 (363)
T Consensus 127 ~~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd~~G~dVLll~DslTr~A 176 (274)
T cd01133 127 SKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHH
T ss_conf 33799983455540578999999999999999728985999971868999