HHsearch alignment for GI: 255764460 and conserved domain: cd01133

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.00  E-value=4.1e-05  Score=51.90  Aligned_cols=111  Identities=21%  Similarity=0.364  Sum_probs=70.8

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCC--HHHHHHH-CCC-H
Q ss_conf             55014772789997238972688079997068723789999998752008-98799997388556--6889981-988-3
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT-GGTCAFVDAEHALD--SIYARKL-GVD-L  119 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~-g~~~~~iD~E~~~~--~~~a~~~-Gvd-~  119 (363)
T Consensus        50 ~e~l~TGIr~ID~l~p---igkGQR~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~~~~~l  126 (274)
T cd01133          50 TEILETGIKVIDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVL  126 (274)
T ss_pred             CCCCCCCCEEEECCCC---CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCC
T ss_conf             8731158666644466---1478577875799998236899999999850898799998425548899999972035665


Q ss_pred             HH--EEEEECC--------CHHHHHHHHHHHHHC-CCCCEEEEECCCCCC
Q ss_conf             34--4897258--------489999999999744-897689981433322
Q gi|255764460|r  120 KN--LLISQPD--------TGEQALEITDMLVRS-GAVDIIVIDSVAALT  158 (363)
Q Consensus       120 ~~--l~~~~~~--------~~E~~~~i~~~li~~-~~~~liViDSi~al~  158 (363)
T Consensus       127 ~~tvvv~~tad~~~~~r~~~~~~a~aiAE~frd~~G~dVLll~DslTr~A  176 (274)
T cd01133         127 SKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFT  176 (274)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHH
T ss_conf             33799983455540578999999999999999728985999971868999