HHsearch alignment for GI: 255764460 and conserved domain: cd01134

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=97.03  E-value=0.011  Score=36.57  Aligned_cols=118  Identities=22%  Similarity=0.334  Sum_probs=67.7

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCC-HHHHHHH-------
Q ss_conf             550147727899972389726880799970687237899999987520089879999-7388556-6889981-------
Q gi|255764460|r   45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALD-SIYARKL-------  115 (363)
Q Consensus        45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i-D~E~~~~-~~~a~~~-------  115 (363)
T Consensus       138 ~~PL~TGir~ID~l~P---ig~Gqr~~I~g~~g~GKT~l~-~~i~k~~~~d-v~Vyv~iGeRg~ev~e~l~~f~el~~~~  212 (369)
T cd01134         138 NEPLLTGQRVLDTLFP---VVKGGTAAIPGPFGCGKTVIQ-QSLSKYSNSD-IVIYVGCGERGNEMTEVLEEFPELTDPV  212 (369)
T ss_pred             CCCHHHHHHHHHHHCC---CCCCCEEEEECCCCCCHHHHH-HHHHHCCCCC-EEEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf             9862653568874253---214764677668776899999-9998537998-8999997114189999999867741333


Q ss_pred             -CCC-HHH-EEEEECCC-----HH----HHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHH
Q ss_conf             -988-334-48972584-----89----999999999744897689981433322-026554345
Q gi|255764460|r  116 -GVD-LKN-LLISQPDT-----GE----QALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDM  167 (363)
Q Consensus       116 -Gvd-~~~-l~~~~~~~-----~E----~~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~  167 (363)
T Consensus       213 ~g~~~~~rtvvVa~ts~~p~~~r~~s~y~g~tiAEyfRd~G~~Vll~~DslsR~A~A~REisl~l  277 (369)
T cd01134         213 TGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRL  277 (369)
T ss_pred             CCCCHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             46641020368742777998899888989999999999689887998075899999988998863