HHsearch alignment for GI: 255764460 and conserved domain: cd01136
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.79 E-value=0.00012 Score=49.06 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCC-HHHHHHH-CCC-H
Q ss_conf 6550147727899972389726880799970687237899999987520089879999-7388556-6889981-988-3
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALD-SIYARKL-GVD-L 119 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i-D~E~~~~-~~~a~~~-Gvd-~ 119 (363)
T Consensus 49 v~e~l~TGI~~ID~l~p---igrGQR~~Ifg~~g~GKt~Ll~~i~-~~~~~~-v~V~~~IGer~rev~e~~~~~~~~~~l 123 (326)
T cd01136 49 IDEVLPTGVRAIDGLLT---VGKGQRLGIFAGSGVGKSTLLGMIA-RGTTAD-VNVIALIGERGREVREFIEKDLGEEGL 123 (326)
T ss_pred CCCCCCCCCCHHCCCCC---CCCCCEEEEECCCCCCCCHHHHHHH-HCCCCC-EEEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 88751157704200266---2479878743699998466787686-414677-599996053388999999986245653
Q ss_pred HH--EEEEECC-C-------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 34--4897258-4-------89999999999744897689981433322
Q gi|255764460|r 120 KN--LLISQPD-T-------GEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 120 ~~--l~~~~~~-~-------~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 124 ~~tvvv~atad~~~~~r~~a~~~a~~~AEyfrd~G~dVL~~~Dsltr~A 172 (326)
T cd01136 124 KRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFA 172 (326)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 2228996068899899999888777778899975873378752468999