HHsearch alignment for GI: 255764460 and conserved domain: cd01136

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.79  E-value=0.00012  Score=49.06  Aligned_cols=110  Identities=21%  Similarity=0.299  Sum_probs=66.3

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCC-HHHHHHH-CCC-H
Q ss_conf             6550147727899972389726880799970687237899999987520089879999-7388556-6889981-988-3
Q gi|255764460|r   44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFV-DAEHALD-SIYARKL-GVD-L  119 (363)
Q Consensus        44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~i-D~E~~~~-~~~a~~~-Gvd-~  119 (363)
T Consensus        49 v~e~l~TGI~~ID~l~p---igrGQR~~Ifg~~g~GKt~Ll~~i~-~~~~~~-v~V~~~IGer~rev~e~~~~~~~~~~l  123 (326)
T cd01136          49 IDEVLPTGVRAIDGLLT---VGKGQRLGIFAGSGVGKSTLLGMIA-RGTTAD-VNVIALIGERGREVREFIEKDLGEEGL  123 (326)
T ss_pred             CCCCCCCCCCHHCCCCC---CCCCCEEEEECCCCCCCCHHHHHHH-HCCCCC-EEEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf             88751157704200266---2479878743699998466787686-414677-599996053388999999986245653


Q ss_pred             HH--EEEEECC-C-------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             34--4897258-4-------89999999999744897689981433322
Q gi|255764460|r  120 KN--LLISQPD-T-------GEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       120 ~~--l~~~~~~-~-------~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
T Consensus       124 ~~tvvv~atad~~~~~r~~a~~~a~~~AEyfrd~G~dVL~~~Dsltr~A  172 (326)
T cd01136         124 KRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFA  172 (326)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             2228996068899899999888777778899975873378752468999