HHsearch alignment for GI: 255764460 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=100.00 E-value=0 Score=364.86 Aligned_cols=209 Identities=45% Similarity=0.674 Sum_probs=189.4
Q ss_pred CCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC------CEEEEEECCCCCCHHHHHHHCCC---
Q ss_conf 147727899972389726880799970687237899999987520089------87999973885566889981988---
Q gi|255764460|r 48 VSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTG------GTCAFVDAEHALDSIYARKLGVD--- 118 (363)
Q Consensus 48 i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g------~~~~~iD~E~~~~~~~a~~~Gvd--- 118 (363)
T Consensus 1 isTG~~~lD~~Lg-GGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~ 79 (226)
T cd01393 1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred CCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9887478998857-998888399999999998999999999998542211699961999955775319999999876032
Q ss_pred -----HHHEEEEECCCHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf -----33448972584899999999997---4489768998143332202655434555302247888767767777642
Q gi|255764460|r 119 -----LKNLLISQPDTGEQALEITDMLV---RSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSI 190 (363)
Q Consensus 119 -----~~~l~~~~~~~~E~~~~i~~~li---~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~ 190 (363)
T Consensus 80 ~~~~~l~~i~~~~~~~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~r~~~~~----~~~~~~r~~~l~~~~~~L~~la 155 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG----RGMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred CHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCHHHCC----CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 667764333684379999999999999987524784289993220011144427----6207899999999999999999
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEE
Q ss_conf 017818999863411456654665125655311111124897504553445772476799987740577898515899
Q gi|255764460|r 191 SRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEF 268 (363)
Q Consensus 191 ~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~ 268 (363)
T Consensus 156 ~~~~~avv~tNQv~~~i~~~~~~~~~p~gG~~w~~~~~~Ri~l~k~~~~------~~~~r~~~~~k~p-~~p~~~~~~ 226 (226)
T cd01393 156 DKFNVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGRGI------IGERRIAKVVKSP-ALPEAEAEF 226 (226)
T ss_pred HHCCCEEEEECEEEECCCCCCCCCCCCCCHHHHHHHCEEEEEEEECCCC------CCCEEEEEEEECC-CCCCCCCCC
T ss_conf 9849799996811781578789988787636646002699999966888------7887999999898-998766879