HHsearch alignment for GI: 255764460 and conserved domain: cd02034
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.72 E-value=0.14 Score=29.56 Aligned_cols=84 Identities=29% Similarity=0.375 Sum_probs=53.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHH---HEEE---EECC-----CHHHH-H-HH
Q ss_conf 999706872378999999875200898799997388556688998198833---4489---7258-----48999-9-99
Q gi|255764460|r 70 VEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLK---NLLI---SQPD-----TGEQA-L-EI 136 (363)
Q Consensus 70 ~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~---~l~~---~~~~-----~~E~~-~-~i 136 (363)
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp~---dlpe~~~~~~~~~~~l~~lg~~~~~g~GC~C~~n~ll~~~ 78 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD---DLPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENALLNAL 78 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC---CCHHHHCEECCCCCEEEEEECCCCCCCCEECCHHHHHHHH
T ss_conf 7898899774999999999999978996999989897---1235542331787079999734358994088257899999
Q ss_pred HHHHHHCCCCCEEEEECCCCC
Q ss_conf 999974489768998143332
Q gi|255764460|r 137 TDMLVRSGAVDIIVIDSVAAL 157 (363)
Q Consensus 137 ~~~li~~~~~~liViDSi~al 157 (363)
T Consensus 79 l~~l~~-~~~~~VvvD~eAGi 98 (116)
T cd02034 79 LRHLVL-TRDEQVVVDTEAGL 98 (116)
T ss_pred HHHHCC-CCCCEEEEECCCCH
T ss_conf 999706-79989999678548