HHsearch alignment for GI: 255764460 and conserved domain: cd03115

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.17  E-value=3.6e-05  Score=52.23  Aligned_cols=85  Identities=21%  Similarity=0.384  Sum_probs=58.3

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHHHHHH--
Q ss_conf             079997068723789999998752008987999973885566-------88998198833448972584899999999--
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQALEITD--  138 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~--  138 (363)
T Consensus         1 ~Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~D-t~R~gA~eQL~~~a~~l~v~~~~-----~~~~~~~~~~~~~~   74 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD-TYRPAAIEQLRVLGEQVGVPVFE-----EGEGKDPVSIAKRA   74 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-CCCHHHHHHHHHHHHHCCCEEEE-----CCCCCCHHHHHHHH
T ss_conf             9999989999988999999999999769928999748-87577999999999974985992-----27755879999999


Q ss_pred             -HHHHCCCCCEEEEECCCCCC
Q ss_conf             -99744897689981433322
Q gi|255764460|r  139 -MLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       139 -~li~~~~~~liViDSi~al~  158 (363)
T Consensus        75 ~~~~~~~~~D~IlIDTaGr~~   95 (173)
T cd03115          75 IEHAREENFDVVIVDTAGRLQ   95 (173)
T ss_pred             HHHHHHCCCCEEEEECCCCCC
T ss_conf             999875689989997888787