HHsearch alignment for GI: 255764460 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.62 E-value=0.041 Score=32.91 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.8
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 72688079997068723789999998752008
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKT 94 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~ 94 (363)
T Consensus 44 ~i~~GeivgilG~NGaGKSTLl-~~i~Gl~~p 74 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLL-RLLAGIYPP 74 (224)
T ss_pred EECCCCEEEEECCCCCHHHHHH-HHHHCCCCC
T ss_conf 9838989999979998199999-999758777