HHsearch alignment for GI: 255764460 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.81 E-value=0.03 Score=33.83 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=46.1
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEE-CCCHHH-HHHHHHH
Q ss_conf 7268807999706872378999999875200-898799997388556688998198833448972-584899-9999999
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQK-TGGTCAFVDAEHALDSIYARKLGVDLKNLLISQ-PDTGEQ-ALEITDM 139 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk-~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~-~~~~E~-~~~i~~~ 139 (363)
T Consensus 22 ~i~~ge~~~l~G~NGsGKTTl~-~~l~G~~~~~~G~i~-~~~~~---------------~i~y~~QLSgGqkqr~~la~a 84 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLL-KLIAGELEPDEGIVT-WGSTV---------------KIGYFEQLSGGEKMRLALAKL 84 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCEEEE-ECCCC---------------EEEEEHHCCHHHHHHHHHHHH
T ss_conf 9879999999989998499999-998489889850999-99960---------------899870079999999999999
Q ss_pred HHHCCCCCEEEEECCC
Q ss_conf 9744897689981433
Q gi|255764460|r 140 LVRSGAVDIIVIDSVA 155 (363)
Q Consensus 140 li~~~~~~liViDSi~ 155 (363)
T Consensus 85 l~~~--p~iliLDEPt 98 (144)
T cd03221 85 LLEN--PNLLLLDEPT 98 (144)
T ss_pred HCCC--CCEEEEECCC
T ss_conf 7259--9899995775