HHsearch alignment for GI: 255764460 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.0018 Score=41.49 Aligned_cols=90 Identities=26% Similarity=0.408 Sum_probs=54.7
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCCH-HHHHHHCCCHHHEEEEECCC--------HH
Q ss_conf 7268807999706872378999999875200898799997388--5566-88998198833448972584--------89
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEH--ALDS-IYARKLGVDLKNLLISQPDT--------GE 131 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~--~~~~-~~a~~~Gvd~~~l~~~~~~~--------~E 131 (363)
T Consensus 24 ~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~tv~eNiLSgGq 101 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDGVDLRDLDLESLRKNIAYVPQDPFLF-SGTIRENILSGGQ 101 (171)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEEECCCCCCC-CCCHHHHCCCHHH
T ss_conf 985998999999999839999999976775897489-99999988599899863189996668437-5779997744889
Q ss_pred -HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf -9999999997448976899814333
Q gi|255764460|r 132 -QALEITDMLVRSGAVDIIVIDSVAA 156 (363)
Q Consensus 132 -~~~~i~~~li~~~~~~liViDSi~a 156 (363)
T Consensus 102 ~Qri~lARal~~~--p~illlDEpts 125 (171)
T cd03228 102 RQRIAIARALLRD--PPILILDEATS 125 (171)
T ss_pred HHHHHHHHHHHHC--CCEEEEECCCC
T ss_conf 9999999999748--99899957766